Pairwise Alignments

Query, 1136 a.a., Vitamin B12 transporter BtuB from Xanthobacter sp. DMC5

Subject, 784 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

 Score =  211 bits (538), Expect = 1e-58
 Identities = 198/727 (27%), Positives = 312/727 (42%), Gaps = 94/727 (12%)

Query: 180 ELERFPGLTAGSIFQGTPGVISGSSNNGA-AIDPNIRGLQGMNRVATTIDGSQQSSSSYR 238
           +L++  G+    IF G   V S + +N A A+D  IRG+QG  RV   IDGS QS+ + R
Sbjct: 82  DLDKVRGIANADIFSGITSVQSNNMHNEAGALDIGIRGVQGEGRVPIFIDGSLQSTHTSR 141

Query: 239 GYAGVSSRTFVDPDLISGITVTKG----PDGAVGGAIGGIIAMDTLGITDILKPGDTYGV 294
           GY GVS RT++D DL+S +TV KG          GA+GG++   TLGI DI+K    +GV
Sbjct: 142 GYQGVSDRTYIDTDLLSSLTVNKGATIESSPYASGAVGGVVNATTLGIKDIIKDDQAFGV 201

Query: 295 RARMGLNSNGTTPLIGAKAADFG---------HSDADNWSGSFAAAVTTPNVDLVAAYVQ 345
             +   N++  TP +    ++ G         HS   + S          + + V AY +
Sbjct: 202 VLKARANNHNRTPDVSGDYSEQGQYALDERGEHSAFKHGSLMLGLGYQAESFNTVLAYSK 261

Query: 346 RQSGNYFAGTQGDLTTENYLGKQVRLSNYYYGQQVYNTSEDVASGLLKATVRPADGHELQ 405
           R  GN+FAG +G    E Y    V       GQ+V NTS +  S L K        H   
Sbjct: 262 RSKGNHFAGKKG---YEEYQEPVVG-----QGQEVVNTSFESDSWLFKLASDTGTAHNAD 313

Query: 406 LSYLYYGNDFGEVTPSAIAVGTNVTW-------------QIPLSSVALNQATARYHYKPD 452
            +Y ++    GEV   A    ++  W             Q  L +  +N  +A Y+Y+PD
Sbjct: 314 FNYRHHAQKAGEVL-MAYWYKSSEDWEGNPYPDGKDRMPQWGLGTAKVNTYSANYYYQPD 372

Query: 453 GNELVDFKVNAYGSNIDEVTVFTLAKDTTKIKQ-----QTQNAGISAENTSRFLLASTPI 507
            +  ++   N + +  D      L    T  +Q         +G+S  N +  LL   P+
Sbjct: 373 -HPWLNLNANFWYTEADLAQYNGLWALGTNAEQYFHAYHNDRSGLSLTNET--LLTQWPV 429

Query: 508 SLRYGGTYALEVARPNFPINPED-----FSGWAVPADADREIGTLFARAKLEPLSWLTLE 562
            L YG      +A+ N  ++PE+     F+         R    LFA A ++  S L ++
Sbjct: 430 RLNYG------LAQQNERLSPEEDGQTRFTKTVTSRHGKRTAQNLFANADID-YSPLRVQ 482

Query: 563 AGLEYLTYETTFNGTSFEYIGPEFTSYSGSGVSPTVSATVTPLPGWQLYAQYSTGIRPPS 622
            GL         N  S +Y   +   Y    +      T    P  QL+ + S   R PS
Sbjct: 483 LGL------NLHNAKSTDYQTKQQLDYK-EKLDLLSEFTYALTPSTQLFLKSSRTYRMPS 535

Query: 623 TREVSQTRNDQRFNP--TLQAENAVNYEVGTNLLKSDVFLPGDKLRAKVAYFDNTTNNYI 680
             E + +     +NP   ++ E A N EVG   + S+  L  D+L   V+YF N+  ++I
Sbjct: 536 LYETTLSNEVFSYNPYNPIKPEQAWNNEVGVQFMASNSVLQDDRLNLSVSYFRNSIKDFI 595

Query: 681 --GR--------QFSINMSLFNYDYVRFKGAEFSGGYDAGPAFVDFGFNYYTDFEACLL- 729
             GR        ++  N +  NYD ++  G E    Y     +  F    Y++ + C + 
Sbjct: 596 SGGRLAKTPGMSEWQANFTFTNYDKLQLSGWELGAHYQYAWLYTHFAATLYSETKICSVQ 655

Query: 730 ------NGQCMSYTPQADYLANQVPPRFTASVTAGMRFWDDRVTLGGRLTYMGQR----- 778
                 +  C S          ++PP+    +  G +F++D +  G +++Y   +     
Sbjct: 656 QAQYAESDTCNSLGFAWGLTPTRIPPKQNLYLNVGTKFFNDTLDSGVKVSYHSGKSNPSD 715

Query: 779 -LAPLVADPSYFSTIAKNWAPYTIVDLFGQWKINDTLTFDVSVQNLLDAYYVDALNNTDM 837
            LA   A+P     I +  + YTI DL+ Q+++N       ++ N+ D Y V   +   M
Sbjct: 716 WLAGTAANP-----ILEIPSDYTI-DLYSQYELNANTQLFFAINNVTDRYQVRPGSVVSM 769

Query: 838 PAPGRVI 844
           P PGR I
Sbjct: 770 PDPGRTI 776