Pairwise Alignments

Query, 167 a.a., putative RNA polymerase sigma factor FecI from Xanthobacter sp. DMC5

Subject, 171 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog from Pseudomonas stutzeri RCH2

 Score = 71.6 bits (174), Expect = 6e-18
 Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 3/162 (1%)

Query: 5   LQRLFLRHAREINRFLRRRGHSAETAADLTQDTFVRLLAA-APRGNGDNPSAYLHQVARN 63
           L RL+  H   +N +LRR+   ++ AADL QDTFVR++      G    P AYLH +A+ 
Sbjct: 12  LHRLYSDHHGWLNGWLRRQLGCSQRAADLAQDTFVRVMTKDEDMGAIREPRAYLHTIAKG 71

Query: 64  LSVDLYRRERLVEFVDLPATDFQGLADFAPGPEAVTYDRQRLAIVARALSELPEQTRTAF 123
           L ++ +RR R +E   L A   Q     AP PE+     + L  +   L++LP + R AF
Sbjct: 72  LLINHWRR-RQIEQAYLDALALQPEL-VAPSPESQALIVETLLQIDAMLAQLPAKVRRAF 129

Query: 124 EMHRLGERTMQEIATDLHLSVSRTWALIRRAYLHLRASLNDD 165
            M +L   T   IA +L +S       + +A LH    + +D
Sbjct: 130 LMSQLQGMTYAAIAAELGVSERMVKKYMAQAMLHCLLLVAED 171