Pairwise Alignments

Query, 403 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

Subject, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

 Score =  136 bits (342), Expect = 1e-36
 Identities = 102/393 (25%), Positives = 175/393 (44%), Gaps = 24/393 (6%)

Query: 11  RTVATLTKPGRHADGGNLYLSISTNGGRRWIFLYRWAGKQLEMGLGSARDVSLARARELA 70
           ++V    +  + +DGG L+L +   GG+ W + YR  GK+    +GS   VSLA AR   
Sbjct: 12  KSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVSLAEARTAR 71

Query: 71  DAARAQLAEGVNPLDARRA------------ERVVIPTFGEFADGLVQDIQSGFRNEKHR 118
           + ARA + +G++P   R+             +R    +F + A   + +I+  F +  +R
Sbjct: 72  EKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIKPVFAHSSYR 131

Query: 119 WQWQHTLEVYAAALRPIQIDSVTTEDVLGILQPLWQTKQETASRLRGRIERVLDAAKAKG 178
            +     +  +     + +  +  + +  +L+         A  ++G +  + + A  +G
Sbjct: 132 TKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIHVKGDLSAIFEFAVVRG 191

Query: 179 LRAGDNPARWRGHLDALLPKRQKLQRGHHPALPHASVPAFVAELQKRRA--TAALALEFA 236
           L   +     RG L     + +        A+    +  F   L+  R     AL L   
Sbjct: 192 LVEANPIPSLRGLLRVPASESKA-------AMTREQIQKFYQALRGYRGYPETALCLRLI 244

Query: 237 ILTAARSGEVLGATWVEIDRKAKIWTVPAVRMKAGKEHRVPLSDRALEILDEAAAQRTDG 296
            LTA R GE   A W E D +  +W  PA +MKA +EH  PLS +A+ +L +       G
Sbjct: 245 ALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQRITGGG 304

Query: 297 GFVFPGPRKGKPLSN-MAMAMLLRVRMKRPEITVHGFRSSFRDWAGECTSFPREVAEAAL 355
            ++FP  R GK  +    +   +R        T H +R++F  WA E   F  +  E  L
Sbjct: 305 RYLFP-HRSGKGFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANE-NGFRPDAIERQL 362

Query: 356 AHTVGDEVERAYRRADALEKRRKLMEAWAKYVT 388
           AH   ++V   Y +A  L++RR L++AWA Y++
Sbjct: 363 AHVESNKVRATYNKALLLDQRRSLLQAWAGYLS 395