Pairwise Alignments

Query, 403 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

Subject, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  142 bits (359), Expect = 1e-38
 Identities = 122/399 (30%), Positives = 183/399 (45%), Gaps = 32/399 (8%)

Query: 8   LTARTVATLT---KPGRHADGGNLYLSISTNGGRRWIFLYRWAG--KQLEMGLGSARDVS 62
           LTAR + T     K  R +DGGNLY  +  +  R W F Y+  G  K   +  G+  D+S
Sbjct: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64

Query: 63  LARARELADAARAQLAEGVNPLDARRAERVVI-----PTFGEFADGLVQDIQSGFRNEKH 117
           LA ARE A  AR QLA+G++P  A+  ++         TF   A+      +   + +  
Sbjct: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124

Query: 118 RWQWQHTLEVYA-AALRPIQIDSVTTEDVLGILQPLW-QTKQETASRLRGRIERVLDAAK 175
              W+  LE+YA   L  I +  +T    +  L+P+  Q   ET  R    +  +++ A 
Sbjct: 125 EGNWRK-LELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAV 183

Query: 176 AKGLRAGDNPARWRGHLDALLPKRQKLQRGHHPALPHASVPAFVAELQKRRATAALA--- 232
             G+           H + L   R   ++ H      A  P  + +L +  ATA +    
Sbjct: 184 NSGVI----------HANPLAGIRDVFKK-HKVVHMKALQPHEMHDLIRTVATANIQHVT 232

Query: 233 ---LEFAILTAARSGEVLGATWVEIDRKAKIWTVPAVRMKAGKEHRVPLSDRALEILDEA 289
              +E+ + T  R  E  GA W EID   K+W +P  RMK  +EH VPL+ + L IL+  
Sbjct: 233 RFLIEWQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAI 292

Query: 290 AAQRTDGGFVFPGPRKGKPLSNMAMAMLLRVRMK-RPEITVHGFRSSFRDWAGECTSFPR 348
                   F+FP  R  K  ++   A     RM  +   T HG R+       E   F  
Sbjct: 293 KPISGHREFIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNE-QGFEP 351

Query: 349 EVAEAALAHTVGDEVERAYRRADALEKRRKLMEAWAKYV 387
           +V EAALAHT  +++ +AY R D L+ RRKLM  W++++
Sbjct: 352 DVIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHI 390