Pairwise Alignments

Query, 403 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

Subject, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  136 bits (342), Expect = 1e-36
 Identities = 114/386 (29%), Positives = 179/386 (46%), Gaps = 31/386 (8%)

Query: 23  ADGGNLYLSISTNGGRRWIFLYRW--AGKQLEMGLGSARDVSLARARELADAARAQLAEG 80
           +DG  L L + TNG + WI  Y      K+  +  G   DVSLA AR+    A+  LA  
Sbjct: 26  SDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVSLAEARKRRSEAKTLLALN 85

Query: 81  VNP-------LDARRAERVVIPTFGEFADGLV----QDIQSGFRNEKHRWQWQHTLEVYA 129
           ++P       L   RAE  +  TFG+++D  +    + ++    ++ +R   +H L    
Sbjct: 86  IDPKQHKDEQLLKERAE--LENTFGKYSDRWLTLKRESVKPETADKAYRALEKHILP--- 140

Query: 130 AALRPIQIDSVTTEDVLGILQPLW-QTKQETASRLRGRIERVLDAAKAKGLRAGDNPARW 188
             L  + I  +    VL IL+P+  Q   ET  RL   I  V+  A A    +GD    +
Sbjct: 141 -KLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVA----SGDIEVNY 195

Query: 189 RGHLDALLPKRQKLQRGHHPALPHASVPAFVAELQKRRATAALA--LEFAILTAARSGEV 246
              +  L P  +   R H   +    +P  +  +     T A    LE+ + T  R  E 
Sbjct: 196 LADITKLFPAPK---RQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHTMTRPIES 252

Query: 247 LGATWVEIDRKAKIWTVPAVRMKAGKEHRVPLSDRALEILDEAAAQRTDGGFVFPGPRKG 306
             A W +ID K K+W +PA RMK  + H +PL+++ L +L+      +   ++FP  +  
Sbjct: 253 ATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREYIFPSNKNP 312

Query: 307 KPLSNMAMAMLLRVRM-KRPEITVHGFRSSFRDWAGECTSFPREVAEAALAHTVGDEVER 365
           K   N   A +   RM  + ++  HG R+       E   F  ++ EAALAH   +EV +
Sbjct: 313 KSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNE-QGFNPDIIEAALAHVDKNEVRK 371

Query: 366 AYRRADALEKRRKLMEAWAKYVTGGA 391
           AY RA+ LE+RRKLM  W+ ++T  +
Sbjct: 372 AYNRAEYLEQRRKLMSWWSSHITSAS 397