Pairwise Alignments

Query, 1090 a.a., Efflux pump membrane transporter BepE from Xanthobacter sp. DMC5

Subject, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  228 bits (580), Expect = 2e-63
 Identities = 247/1092 (22%), Positives = 466/1092 (42%), Gaps = 86/1092 (7%)

Query: 1    MSETSKGETHSGENRPLGIAGVLTRTFIASPLTPLLLLAAFAFGLIALITLPREEEPQIS 60
            MSE  +    + EN+  G+A       + S +  L+ L     G  A   L R E+P  +
Sbjct: 6    MSEQKQTPPENNENQ--GVAAYFINNRVISWMVSLIFLIG---GTAAFFNLGRLEDPAFT 60

Query: 61   VPMVDIRVSAQGLKAEDAVKLVTEPLETIVKAIDGVEHVYSQTEDDGVLVTARFLTGTSP 120
            +    +  S  G   +   + VT PLE  ++ +  V+ V S +      +T        P
Sbjct: 61   IKDAMVVTSYPGATPQQVEEEVTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGP 120

Query: 121  DAAILRVHEKVRANLD----RIPVGITEPLIVGRSIDDVAILVLTLVPKPEAASRWTAND 176
            D  + ++ +++R  ++     +P G+  PL++    D   IL+            ++  +
Sbjct: 121  DD-LPQIWDELRRKVNDLKGALPPGVNPPLVIDDFGDVYGILLAV------TGEGYSYKE 173

Query: 177  LTRVARELQADISKLPDIGLTYIVGEQPEEIRVAPDPERLSLYGITLAQLQGKLEGANRT 236
            L      L+ ++  +  +    + G+Q E++ +    +R+S  GI+   +   L   N  
Sbjct: 174  LLDYVDYLRRELELIDGVSKVSVSGQQQEQVFIEISMKRISTLGISPQTVFNLLSTQNLV 233

Query: 237  FNTGTVREAAGQRTLVAGQTLQTPSEIGGILLTSRDGRP-VYVRDVANVTLATQPAEHYV 295
             + G +R  +    +          ++G ++L+ R  +  +Y+RDVA V           
Sbjct: 234  SDAGAIRIGSEYIRIHPTGEFDDVEKLGDLILSERGAQGLIYLRDVAEVKRG-------- 285

Query: 296  THIEKGPDGLT--RRPAVSLAIAKRPGTNAVVIAEEVLRQIEAAHGSTLPADVEVKVTRN 353
             ++E   + +T   + A+++ ++   G N V + +   R++ A      P  +++    +
Sbjct: 286  -YVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRFDRRL-AELKYQQPIGIDIAEVYS 343

Query: 354  YGESANEKANELLLHLGLATVSIVVLVGFAIGWREALVVAVVIPTTILLTLFAARLMGYT 413
              +  ++  +  ++ LG A   +++++ F +G R  L++ +++  T+L T    +     
Sbjct: 344  QPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLLIGLILLLTVLGTFIFMQYFKID 403

Query: 414  LNRVSLFALIFSIGILVDDAIVVIENIARHWAMKDGRSRAQGAIDAVAEVGNPTIVATLT 473
            L R+SL AL+ ++G+LVD+AIVV+E I      + GR+R Q A D V +   P + AT+ 
Sbjct: 404  LQRISLGALVIALGMLVDNAIVVVEGIL--IGTQKGRTRLQAATDIVTQTKWPLLGATVI 461

Query: 474  VVAALLPMLFVSGMMGPYMSPIPANASAAMVFSFFVAVVLTPWLM-LKIAGRAGQDDAGH 532
             V A  P+       G Y   +      +++ S+F A+ LTP+   L   G+     A  
Sbjct: 462  AVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISLTPFFADLFFRGQ----KAPA 517

Query: 533  GGDHGEAADGGRLGRFYVRVARPILTSRARAGAFLATVGVATLA-SLSLFYTHAVTVKLL 591
             G+  +   G     F   V R  L    R  A+L T+GV  L  + SL+    V     
Sbjct: 518  SGEESDPYQG-----FIFVVYRRFLEFCMRR-AWL-TMGVLVLGLAASLYGFTKVKQAFF 570

Query: 592  PFDNKTELAVILDMPADTPVERTDSTLNAMVNALSDLPESVSFQTHAGTAAPFNFNGLVR 651
            P        V + MP  T +  TD+ L  +   LS      S  T AG         ++ 
Sbjct: 571  PSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTTTAGKGLQ---RFMLT 627

Query: 652  HYGLRSAPKQGDIQINLKEKGERSRSSHEIALDVRNRLKSIALPSGSSLRVVEPPPGPPV 711
            +   +S    G+I   + +  + +      AL  R R    A     + ++ +   GP  
Sbjct: 628  YSPEKSYAAYGEITTRVTDYQQLA------ALMARFRAHLDARYPQINYKLKQIELGPGG 681

Query: 712  LATLLAEIYGPDPDTRRSVARKVRQAFESVPFIVDVDDSFGTPGERVRLAIDQDNLEFYK 771
             A + A I G DP   RS+A +V     + P   ++   +    + +    ++     Y 
Sbjct: 682  GAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQARRYG 741

Query: 772  VEQGDVYDAIRGIFAGGTLGYSHRGGGRAPIPIRL--EMSKGNKAVDERTLATPVPANAL 829
            + + DV + +   F+G T+G    G    PI  RL  E     + ++   + +P  +  +
Sbjct: 742  ITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPALSEYI 801

Query: 830  PGGRGVVELGDVVRVVREPASFPIFRHNGRPAEMVTADLAGTYEAPVYGMMAVSKALENM 889
            P  +  V LG  +R   +P    I R N +    V AD        + G    +   + +
Sbjct: 802  PLQQ--VTLGYEMR-WEDPL---IVRKNRKRMLTVMAD------PDLLGEETAATLQQRL 849

Query: 890  DFGSLPKPVIALHGQPSDETKPT-----LLWDGEWEVTWVTFRDMGGAFIVAILGIYILV 944
                          QP  E  P      L W GE+E +      +     +  L ++++ 
Sbjct: 850  --------------QPQIEAIPLPPGYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLIT 895

Query: 945  VAQFGSFKLPLVILTPIPLTFIGIMTGHWLFGAPFSATSMIGFIALAGIIVRNSILLVDF 1004
            V  F S K  L++   +PL  IG+ TG      PF   +++GF++L+G++++N I+L+D 
Sbjct: 896  VFLFNSVKESLIVWLTVPLAVIGVTTGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQ 955

Query: 1005 IRHARTPGRPLEEVLLQAGAIRFKPILLTALAAMIGAAVILTDPIFQGLAISLLFGLASS 1064
            I      G+     ++ A   R +P+ + A+  ++G   +L D  F+ +A++++FGL  +
Sbjct: 956  IEIEMHSGKDPYLAVVDASLSRVRPVCMAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFA 1015

Query: 1065 TALTVLVIPAIY 1076
            T LT++V+P +Y
Sbjct: 1016 TVLTLIVVPVLY 1027