Pairwise Alignments
Query, 1090 a.a., Efflux pump membrane transporter BepE from Xanthobacter sp. DMC5
Subject, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056
Score = 249 bits (637), Expect = 6e-70
Identities = 262/1105 (23%), Positives = 468/1105 (42%), Gaps = 119/1105 (10%)
Query: 19 IAGVLTRTFIASPLTPLLLLAAFAFGLIALITLPREEEPQISVPMVDIRVSAQGLKAEDA 78
I L+RT L +L+A G+ +T+P+E P +++P++ + VS QG+ DA
Sbjct: 5 IDAALSRTRTMLTLLVFILVA----GVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDA 60
Query: 79 VKLVTEPLETIVKAIDGVEHVYSQTEDDGVLVTARFLTGTSPDAAILRVHEKVRANLDRI 138
+L+ PLE +++I+GV+ + + + V F G A+ V + V ++
Sbjct: 61 ERLIVRPLEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKL 120
Query: 139 PVGITEPLI--VGRSIDDVAILVLTLVPKPEAASRWTANDLTRVARELQADISKLPDIGL 196
P EP + V + + + V+ PE + +AR+L+ + I
Sbjct: 121 PADSDEPTVNEVTLAAEQPVLSVVLYGTVPERTT-------VLIARQLRDKLESFRQILS 173
Query: 197 TYIVGEQPEEIRVAPDPERLSLYGITLAQLQGKLEGANRTFNTGTVREAAGQRTLVAGQT 256
I G++ E + + DP + YG+ + + + NR G V G+ ++
Sbjct: 174 VDIAGDREEIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSV 233
Query: 257 LQTPSEIGGILLTSRDGRPVYVRDVANVTLATQPAEHYVTHIEKGPDGLTRRPAVSLAIA 316
++ ++ + + + + DVA V + + E + L +PA+ L I
Sbjct: 234 FESLKDVLELPIKVEGKQVITFGDVATVRKSFRDPESFAR--------LDGKPAIVLDIK 285
Query: 317 KRPGTNAVVIAEEVLRQI-EAAHGSTLPADVEVKVTRNYGESANEKANELLLHLGLATVS 375
KR G N + E V + EA P ++ VK + E N+L ++ A +
Sbjct: 286 KRSGENIIETVELVKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIIL 345
Query: 376 IVVLVGFAIGWREALVVAVVIPTTILLTLFAARLMGYTLNRVSLFALIFSIGILVDDAIV 435
+VV++ +G R +L+V V IP + L L + G T+N V LFALI ++G+LVD AIV
Sbjct: 346 VVVVIIAILGVRTSLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIV 405
Query: 436 VIENIARHWAMKDGRSRAQGAIDAVAEVGNPTIVATLTVVAALLPMLFVSGMMGPYMSPI 495
V E R M++G R++ DA + P +T T +AA P+LF + G +M +
Sbjct: 406 VTEFADRR--MQEGMHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYL 463
Query: 496 PANASAAMVFSFFVAVVLTPWLMLKIAGR--------AGQDDAGHGGDHGEAADGGRLGR 547
P A + S +A++ P ++ + GR + A H GD +A G
Sbjct: 464 PLTLMATLTASLVMALLFVP-VLGSLFGRPQKVTQANQARMVALHNGDFSQAT--GITKA 520
Query: 548 FY----VRVARPILTSRARAGAFLATVGVATLASLSLFYTHAVTVKLLPFDNKTELAVIL 603
+Y + + PI + GA L + +A + + + P + +V +
Sbjct: 521 YYSTLAIAIRHPI---KILCGALLMSAAIA-----FAYGKAGLGAEFFPEVDPPFFSVKV 572
Query: 604 DMPADTPVERTDSTLNAMVNALSDLPESVSFQTHAGTAAPFNFNGLVRHYGLRSAPKQGD 663
D + D ++ + + E S T G + G
Sbjct: 573 RSYGDLSLNEKDRIMSDIEQVMLGHDEFESVYTRTG-----------------GDDEIGV 615
Query: 664 IQINLKEKGERSRSSHEIALDVRNRLKSIALPSGSSLRVVEPPPGPPVLATLLAEIYGPD 723
+QI + R RS I ++ + G + P GPPV L EI
Sbjct: 616 VQITPVDWQYR-RSVKAIIEELEQVTDTF---PGVEIEYKFPDAGPPVEHDLEIEISARV 671
Query: 724 PDTRRSVARKVRQAFESVPFIVDVDDSFGTPGERVRLAIDQDNLEFYKVEQGDVYDAIRG 783
D A++VR E+ P + ++ D+ PG ++ I +D+ + + V + ++
Sbjct: 672 ADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKIDIRRDDASRFAADATLVGNTVQF 731
Query: 784 IFAGGTLGYSHRGGGRAPIPIRLEMSKGNKAV---DERTLATPVPANALPGGRGVVELGD 840
+ G +G + I + + + D+ + T +G+V L +
Sbjct: 732 VTNGLKIGDYLPDDSDEEVDILVRYPSEYRDIGRFDQLRVKT---------AQGLVPLTN 782
Query: 841 VVRVVREPASFPIFRHNGRPAEMVTADLAGTYEAPVYGMMAVSKALENMDFGSLPKPV-I 899
+++ E I R +GR V ADL Y + + A+ +AL + +LP V
Sbjct: 783 FAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLAL-ELPAIEQALREL---NLPSSVEF 838
Query: 900 ALHGQPSDETKPTLLWDGEWEVTWVTFRDMGGAFIVAILGIYILVVAQFGSFKLPLVILT 959
+ GQ ++ + + AF+VA+ + I+++ QF SF +ILT
Sbjct: 839 RIRGQNEEQEHSAVF--------------LEKAFMVALAAMAIILITQFNSFYQAFLILT 884
Query: 960 PIPLTFIGIMTGHWLFGAPFS-ATSMIGFIALAGIIVRNSILLVDFIRHARTPGRPLEEV 1018
+ + +G+ G +F PF S IG IALAGI+V N+I+L+D G EE
Sbjct: 885 AVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGLSREEA 944
Query: 1019 LLQAGAIRFKPILLTALAAMIGAAVILTD-----------------PIFQGLAISLLFGL 1061
+L+ G R +P+LLT + ++G ++ + + LA ++ GL
Sbjct: 945 ILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGL 1004
Query: 1062 ASSTALTVLVIPAIYVVLRGRRTDG 1086
A +T LT+++ P + ++ GRR G
Sbjct: 1005 AFATVLTLVLTPCL--LMLGRRRKG 1027
Score = 48.9 bits (115), Expect = 2e-09
Identities = 51/226 (22%), Positives = 108/226 (47%), Gaps = 39/226 (17%)
Query: 328 EEVLRQIEAAHGSTLPADVEVKVTRNYGESANEKANELLLH----LGLATVSIVVLVGFA 383
E+ LR++ LP+ VE ++ G++ ++ + + L + LA ++I+++ F
Sbjct: 824 EQALRELN------LPSSVEFRIR---GQNEEQEHSAVFLEKAFMVALAAMAIILITQFN 874
Query: 384 IGWREALVVAVVIPTTILLTLFAARLM-----GYTLNRVSLFALIFSIGILVDDAIVVIE 438
++ L++ VI +T+ +FA L+ G ++ + + AL GI+V++ IV+I+
Sbjct: 875 SFYQAFLILTAVIFSTV--GVFAGLLIFQKPFGIIMSGIGVIALA---GIVVNNNIVLID 929
Query: 439 NIARHWAMKDGRSRAQGAIDAVAEVGNPTIVATLTVVAALLPMLFVSGM----------- 487
+ +K G SR + + + P ++ T+T + LLPM+ +
Sbjct: 930 TYNQ--LLKRGLSREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGA 987
Query: 488 -MGPYMSPIPANASAAMVFSFFVAVVLTPWLMLKIAGRAG--QDDA 530
+ S + + + F+ + +VLTP L++ R G +D+A
Sbjct: 988 PSTQWWSQLATAVAGGLAFATVLTLVLTPCLLMLGRRRKGVSEDEA 1033