Pairwise Alignments

Query, 943 a.a., Putative formate dehydrogenase from Xanthobacter sp. DMC5

Subject, 1428 a.a., formate dehydrogenase, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  534 bits (1376), Expect = e-155
 Identities = 302/828 (36%), Positives = 450/828 (54%), Gaps = 35/828 (4%)

Query: 114  LDCLTCSANGDCELQDMAGVVGLRDVRYGYEGENHTKLGKDESNPYFTYEKSKCIVCNRC 173
            L+C  C AN DC+L+D A   G+       E   +  +  D+S+P+  ++ ++CI C +C
Sbjct: 601  LEC-ACQANTDCKLRDYATDYGVESKSLATENARYFSV--DKSSPFIQFDANRCISCGKC 657

Query: 174  VRACEEVQGTFALTISGRGF----------DSRVSP--GMDESFLSSECVSCGACVQSCP 221
            V  C++  G  A+  +   +          D R +P  G   S   S CV CG CVQ CP
Sbjct: 658  VDVCQQQSGHCAIQFAKDSYQVLPQSISPADERRAPRVGFSASMADSHCVQCGNCVQVCP 717

Query: 222  TATLNEKAMYNIG--TPEHSVVTTCAYCGVGCTF--KAEMRGDELVRMVPYKDGKANRGH 277
            T  L +      G  T   +  T C YCGVGC    K +   + +  +   KD   N+G 
Sbjct: 718  TGALVDARDKRQGDCTELTTASTICTYCGVGCRLDLKIDPSTNRIRHIEGNKDSVVNQGM 777

Query: 278  SCVKGRFAYGYAVHQDRILKPMIRSSIHEPWKEVSYEEAIAYAASEFKRIQEKYGKRSVG 337
             CVKGRF + +     R+  P+IR +     +  S+ EAI Y A     I++K G  +  
Sbjct: 778  LCVKGRFGFDFIHSDKRLTTPLIRKN--GKLQPCSWPEAIDYVAKRLTEIKQKDGSNAFA 835

Query: 338  GITSSRCTNEETYLVQKLIRGGFGNNNVDTCARVCHSPTGYGLSVTYGTSAGTQDFDSIE 397
             + S++ TNE+ +++QK +R   G NN+D CAR+CHS T  GL  + G+ A T D  SI+
Sbjct: 836  SLASAKATNEDNFVLQKFVRSVLGTNNIDHCARLCHSSTVTGLQQSIGSGAMTNDILSIK 895

Query: 398  ESDVVLIIGANPTDGHPVFGSRLKKRLR-QGAKLIVVDPRRTDVVRSPHIEAAYHLPLRP 456
            +SDV+ I+G++ T  HP+  S++++ +   GA+LIV DP+R  +     +  A+    RP
Sbjct: 896  DSDVIFILGSDTTCAHPIIASKIQQAVNLYGARLIVADPKRVGIAEKAELYVAH----RP 951

Query: 457  GTNVAIVTALAHVIVTEGLVNEQFVRERCDWEEFQEWAAFVAEERHSPEAVEKYTGVPAD 516
            GT+V ++ A+   I+     ++ ++ +R   E  +   A +A+E +S E     TGV A+
Sbjct: 952  GTDVMLLNAIMAEIIRNNWQDKDYIAKRT--EGIEALYAELAKEDYSLEKAALITGVKAE 1009

Query: 517  AVRGAARLYATGGNGAIYYGLGVTEHSQGSTTVIAIANLAMATGNIGRNGVGVNPLRGQN 576
             +   AR   T    A+YY +G+T+H+ G   V AI+NL +  GNIG +G G+NPLRGQ+
Sbjct: 1010 NIARIARTIGTAQKTAVYYAMGITQHTTGHDNVTAISNLQLLCGNIGVSGAGINPLRGQS 1069

Query: 577  NVQGSCDMGSFPHELPGYRHISDDATRAAFEALWGVGLDDEPGLRIPNMFDAAVEGTYKG 636
            NVQG+CDMG+ P+   GY+ ++D   R  FE+ W   L  E G+   +M     +G    
Sbjct: 1070 NVQGACDMGALPNYFTGYQKVTDIHARMRFESHWQTPLSGEIGVTATHMMHDIAKGKINA 1129

Query: 637  MYVQGEDILQSDPDTKHVSAGLAALECLVVQDLFLNETANYAHVFLPGCSFLEKDGTFTN 696
            +YV GE+ + SDPD  HV   L+ +E LVVQD+FL ETA  AHV LP  +F+EK G FTN
Sbjct: 1130 LYVMGENPVLSDPDQAHVLNALSQIEFLVVQDIFLTETAELAHVVLPAAAFVEKRGHFTN 1189

Query: 697  AERRIQRIRKVMA-PKNGYADWEVTQMLSNALGFPMNYSHPGEIMDEIAALTPSFAGVNY 755
             ERR+QR+ + +A P     DW++ Q ++NA+G   +Y     I  EI ALTP + G+ +
Sbjct: 1190 TERRVQRLEQALASPGEALPDWQIVQAIANAMGANWDYKDEAAIWAEINALTPQYRGILW 1249

Query: 756  KLL--DEMG----SVQWPCNEKAPEGTPIMHIGGFVRGKGKFMLTEYVPTDEKTGPRFPL 809
            + L   E G     +QWPC ++   GTPIMH G F RG G F    Y    E     +PL
Sbjct: 1250 ERLTAGEDGQIPQGIQWPCPDEKHPGTPIMHQGQFTRGLGLFTPVSYRLPAEMPCNEYPL 1309

Query: 810  LLTTGRILSQYNVGAQTRRTENVVWHAEDVLEIHAHDAEVRGIRDGDFVKLDSRAGSTSL 869
             L+TGR+L Q++ G  TR+T  +       + I  +DAE  GI +GD ++L +R G   +
Sbjct: 1310 TLSTGRLLEQFHTGTLTRKTPGLDLLGAPKVMISVYDAEQLGINNGDKIRLTTRRGEIEI 1369

Query: 870  RAVISDRVAPGVVYTTFHHPVTQANVVTTDYSDWATNCPEYKVTAVQV 917
             A ++ R   GV++  FH     AN +T +  D     PEYKV AV+V
Sbjct: 1370 DAFVTKRAQAGVLFLPFHFVEAAANKLTINALDPVAYIPEYKVCAVRV 1417



 Score = 56.2 bits (134), Expect = 1e-11
 Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 18/147 (12%)

Query: 19  LVTLTIDGMTVQVPEGTSIMRAAMEVGNQIPKLC----ATDMLDAFG-----SCRLCLVE 69
           ++ L ID   V      +++ AA + G  IP LC    A+  LD         C LCLV+
Sbjct: 1   MIELRIDNKIVSAEPSDNLLHAARKAGIAIPSLCDPTDASRQLDTQAHAEKQDCNLCLVQ 60

Query: 70  IEGRNGT---PASCTTPVADGIVVKTQTERLKKIRKGVMELYISDHPLDCLTCSANGDCE 126
           IE  + +     +C TP   G+ V TQ+  L K R+  +   +SDH  DC        C+
Sbjct: 61  IENSDASLRCVKACETPAQTGMKVITQSAFLTKQRQAALNAILSDHFADC-----EAPCQ 115

Query: 127 LQDMAGVVGLRDVRYGYEGENHTKLGK 153
               AGV   R + +  +G+ HT+  K
Sbjct: 116 QACPAGVDVQRYLYHIAQGD-HTQAVK 141



 Score = 36.2 bits (82), Expect = 2e-05
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 163 EKSKCIVCN----------RCVRACEEVQGTFALTISGRGFDSRVSPGMDESFLSSECVS 212
           EK  C +C           RCV+ACE    T    I+   F ++       + LS     
Sbjct: 50  EKQDCNLCLVQIENSDASLRCVKACETPAQTGMKVITQSAFLTKQRQAALNAILSDHFAD 109

Query: 213 CGA-CVQSCPTATLNEKAMYNIGTPEHS 239
           C A C Q+CP     ++ +Y+I   +H+
Sbjct: 110 CEAPCQQACPAGVDVQRYLYHIAQGDHT 137