Pairwise Alignments

Query, 645 a.a., Acetoin catabolism regulatory protein from Xanthobacter sp. DMC5

Subject, 379 a.a., sigma-54 interaction domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  203 bits (517), Expect = 1e-56
 Identities = 118/256 (46%), Positives = 154/256 (60%), Gaps = 4/256 (1%)

Query: 341 RLMNAGVPVLIQGETGSGKEVFARQIHARGPRADRTFAAVNCAALPEGLIESELFGYEDG 400
           R  NA V VL+QGETG+GKE+FAR IH    R       V+CA+LPE L+ES LFGY  G
Sbjct: 10  RSSNADVNVLLQGETGTGKELFARAIHRMSQRRGGPLITVDCASLPEHLVESLLFGYSQG 69

Query: 401 AFTGARRAGFKGLFREADGGVLFLDEIGDMPLGLQSRLLRVLQEREVTPLGGGKAVKVDF 460
           AFTGA ++   GL R+ADGG LFLDE+ ++P+ LQ + LRVLQER   P+GGG     DF
Sbjct: 70  AFTGAAKSRV-GLIRQADGGTLFLDEVSELPMSLQKKFLRVLQERRYRPVGGGSEESSDF 128

Query: 461 ALVCASHRDLKMLVEQGSFRADLYFRIAQYTVTLPPLRSLA-DREALVERLWRDMA-GPG 518
            LV A+++DL+ +V +G+FR DL +RI+   V LPPLR    D   + E L +  A   G
Sbjct: 129 RLVAATNKDLQEMVREGTFRDDLLYRISTMRVLLPPLRERGLDIIEIAEHLLQSRAESNG 188

Query: 519 ADAPLLSPACREALARHTWPGNFRQLTGVLKVLLALAEPGETVGPEALPADISAADLRSP 578
                +S   R  L  H WPGN R+L  V+   LA+A  G+ +  E LPA I A  L   
Sbjct: 189 GKVWQMSAEFRARLLAHPWPGNVRELVNVIDCTLAVAGDGDMLFAEHLPATIHAGMLPQS 248

Query: 579 AQPAAASTLPASQAGD 594
           ++P    T PA ++ D
Sbjct: 249 SRPWQGRT-PARRSTD 263