Pairwise Alignments

Query, 1172 a.a., RecBCD enzyme subunit RecB from Xanthobacter sp. DMC5

Subject, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

 Score = 68.6 bits (166), Expect = 2e-15
 Identities = 137/561 (24%), Positives = 205/561 (36%), Gaps = 125/561 (22%)

Query: 358 EACRRYEAEKAARGLLDFDDLITKAAALLAEQPTFVQFKLDQGIDHILVDEAQDTSPEQW 417
           EAC R        GL+DF +++ +A  LL      ++        HILVDE QDT+  Q+
Sbjct: 179 EACDR-------AGLVDFAEILLRALELLRGNQ-HIREHYQARFKHILVDEFQDTNAIQY 230

Query: 418 KVVEGLTSDFFSGEGARAGVTRTIFVVGDEKQSIFSFQGADPRAFGAMRSTFERKVGAEG 477
             +  +           AG    + +VGD+ QSI+ ++GA           F        
Sbjct: 231 AWLRMM-----------AGAQSNVMIVGDDDQSIYGWRGARVENIEKFTREF------PS 273

Query: 478 FRRVELPHSFRSAPGVLEAVDAIFKSEVAHAGLTLDGVGPVHAAIRADAPALVEIWPTTV 537
              + L  ++RS   +LEA + +  +     G  L   G V               P +V
Sbjct: 274 VNTIRLEQNYRSTKTILEASNTLIANNSERMGKQLWTDGLVGE-------------PISV 320

Query: 538 PEPHPEPDNWRRPLDEVPSDDPVSRLAARIAGF-IQAGIANGLAIPSRNGRPMRAGDVLV 596
              + E D  R              + ++I G+  Q G     AI  RN    R      
Sbjct: 321 YSAYNELDEAR-------------FVVSKIKGWQEQGGTLTDCAILYRNNAQSRV----- 362

Query: 597 LVRRRGRVFEAVIRALKELKDPRVQVAGADRLVVPEHIAALDLMALGDALLSPHDDLSLA 656
                  + EA+++A         ++ G  R    + I   D ++    + + +DD +  
Sbjct: 363 -------LEEALLQA-----SLAYRIYGGMRFFERQEIK--DALSYLRLINNRNDDTAFE 408

Query: 657 SVLKSPLFGFTDDDLMAL---CPQRKGTL--ASVLATSDDTRHRAAAARLAGWKG----- 706
            V+ +P  G  D  L  +      R  TL  ASV   +D      AA+ L+ +       
Sbjct: 409 RVINTPPRGLGDKTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINAL 468

Query: 707 EAEGL-RPFDFYGRVLGRDGGRRAMLARLGPEAA----DVLDEFMALARTYEGAEPA-SL 760
           E EG+  P         +  G   M  +   E +    + L+E +   R +E  E A  +
Sbjct: 469 EEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEM 528

Query: 761 AGFLAFLRRGGAETKRDMESGRDE-VRVMTAHGAKGLEAPLVILADTVDMPRPRIAGGLL 819
               AFL     E         D+ V++MT H AKGLE PLV +    +   P       
Sbjct: 529 TMLTAFLTHAALEAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP------- 581

Query: 820 TLPGEGVPVLAPRKAEDPEVLAAARATAAARELEEYRRLFYVALTRAEDALVICGAE-TR 878
                     +   AE+            A  LEE RRL YV +TRA   L I  AE  R
Sbjct: 582 ----------SQMSAEE------------AGRLEEERRLCYVGMTRAMQKLYITYAEMRR 619

Query: 879 APARDKPH-------ARPEGC 892
              +DK H         PEGC
Sbjct: 620 LYGQDKYHKPSRFIRELPEGC 640



 Score = 39.7 bits (91), Expect = 9e-07
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 1  MSSPDLARDPKSEATRRQSEASHPAVSAWVSANAGSGKTHVLARRVIRLL-LAGTPPGRI 59
          M  P L  D  ++  R    A  P  +  + A AGSGKT VL  R+  L+ +    P  +
Sbjct: 1  MIDPSLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSV 58

Query: 60 LCLTYTKAAAANMANRV 76
          + +T+T  AAA M  R+
Sbjct: 59 MAVTFTNKAAAEMRGRI 75