Pairwise Alignments

Query, 1172 a.a., RecBCD enzyme subunit RecB from Xanthobacter sp. DMC5

Subject, 794 a.a., ATP-dependent DNA helicase, Rep family from Synechococcus elongatus PCC 7942

 Score = 96.7 bits (239), Expect = 7e-24
 Identities = 132/543 (24%), Positives = 214/543 (39%), Gaps = 102/543 (18%)

Query: 358 EACRRYEAEKAARGLLDFDDLITKAAALLAEQPTFVQFKLDQGIDHILVDEAQDTSPEQW 417
           E  RRY  + AA   LDFDDL+     L  +    + +   Q   H+LVDE QDT+  Q+
Sbjct: 208 EVYRRYLDQLAANNALDFDDLLLIPVQLFRQNEQVLAY-WHQRFRHVLVDEYQDTNRTQY 266

Query: 418 KVVEGLTSDFFSGEGARAGVTRTIFVVGDEKQSIFSFQGADPRAFGAMRSTFERKVGAEG 477
            ++  LT++            R++FVVGD  QSI+SF+ AD       +  F  ++  + 
Sbjct: 267 DLIRLLTTNGAETRDFDQWNHRSVFVVGDADQSIYSFRAADFTILMGFQDDFGDRLPDDD 326

Query: 478 FR-RVELPHSFRSAPGVLEAVDAIFKSEVAHAGLTL---DGVGPVHAAIRADAPALVEIW 533
            R  V+L  ++RS   +L+A + + ++        L    G G   A  RAD        
Sbjct: 327 TRTMVKLEENYRSTENILQAANELIRNNTERIDKVLRPTRGSGEAIACYRAD-------- 378

Query: 534 PTTVPEPHPEPDNWRRPLDEVPSDDPVSRLAARIAGFIQAGIANGLAIPSRNGRPMRAGD 593
                             DE+   + V +   ++                +    +  GD
Sbjct: 379 ------------------DEMAEAEYVVQQIRQL---------------EQQHPELNWGD 405

Query: 594 VLVLVR--RRGRVFEAVIRALKELKDPRVQVAGADRLVVPEHIAALDLMALGDALLSPHD 651
             +L R   + R FE    +L     P   + G   L   +     D++A   A+ +P D
Sbjct: 406 FAILYRTNAQSRAFE---DSLVRWNVPYTVIGG---LRFYDRREVKDILAYLRAIANPFD 459

Query: 652 DLSLASVLKSPLFGF---TDDDLMALCPQRKGTLASVLATSDDTRHRAA---------AA 699
            +SL  V+  P  G    T   L+    +    L  +L+ S+  ++ A          A 
Sbjct: 460 AVSLLRVVNVPKRGVGKTTIGRLVDAAQELNVPLWEILSDSETVQNLAGRSAKGILEFAN 519

Query: 700 RLAGWKGEAEGLRPFDFYGRVLGRDGGRRAMLARLGPEAAD----VLDEFMALARTYEGA 755
            +  ++ +A+ LRP +   ++L    G  A L R G +  +     L+E +  A  +E  
Sbjct: 520 LVQHFQDQADELRPSELIRQLL-EASGYIAELQRSGTDEDEDRRRNLEELVNAAVQHE-- 576

Query: 756 EPASLAGFLAFLRRGGAETKRDMESGRDEVRVMTAHGAKGLEAPLVILADTVDMPRPRIA 815
           E       + FL      +  D +    +V +MT H +KGLE P+V L          + 
Sbjct: 577 EENDDPSLIGFLGTASLASDADNKEANQQVSLMTLHASKGLEFPVVFLVG--------LE 628

Query: 816 GGLLTLPGEGVPVLAPRKAEDPEVLAAARATAAARELEEYRRLFYVALTRAEDALVICGA 875
            GL           + R  +DP            R +EE RRL YV +TRA++ L +  A
Sbjct: 629 QGLFP---------SFRSLDDP------------RAVEEERRLCYVGITRAQERLFLTHA 667

Query: 876 ETR 878
             R
Sbjct: 668 SAR 670



 Score = 39.7 bits (91), Expect = 1e-06
 Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 15  TRRQSEASHPAVSAWVSANAGSGKTHVLARRVIRLLLA-GTPPGRILCLTYTKAAAANMA 73
           T ++    H +    V A AGSGKT  L  R+  LL      P  IL +T+T  AA  M 
Sbjct: 11  TSQRRAVEHYSGPLLVVAGAGSGKTRALTFRIAHLLRQHRVDPENILAVTFTNKAAKEMK 70

Query: 74  NRVLAILGRWARMDDAVLDAAIAETVGEAPDDALRARARRLFAAALETPGGLKIQTIHAF 133
            R+  +   +A+    +       T+ E     LR+R  R      E    L I T HA 
Sbjct: 71  ERLERL---FAQQLAELQYGQPFTTLREIEKTQLRSRVYR------EVTKDLWIGTFHAI 121

Query: 134 CGGLL 138
           C  +L
Sbjct: 122 CARIL 126