Pairwise Alignments

Query, 1172 a.a., RecBCD enzyme subunit RecB from Xanthobacter sp. DMC5

Subject, 1189 a.a., ATP-dependent nuclease/helicase from Sinorhizobium meliloti 1021

 Score =  715 bits (1846), Expect = 0.0
 Identities = 481/1184 (40%), Positives = 610/1184 (51%), Gaps = 59/1184 (4%)

Query: 15   TRRQSEASHPAVSAWVSANAGSGKTHVLARRVIRLLLAGTPPGRILCLTYTKAAAANMAN 74
            T+RQ+ AS PA SAWVSANAGSGKTHVL +RVIRLLLAG  P  ILCLTYTKAAA+ M+N
Sbjct: 21   TQRQALASDPACSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAASEMSN 80

Query: 75   RVLAILGRWARMDDAVLDAAIAETVGEAPDDALRARARRLFAAALETPGGLKIQTIHAFC 134
            RV   L  WA +DD  L+  I    G+ P  A    ARRLFA ALETPGGLKIQTIHAFC
Sbjct: 81   RVFEKLAEWATLDDTTLEKRIEAIEGKRPPTAKIQEARRLFARALETPGGLKIQTIHAFC 140

Query: 135  GGLLHRFPFEADVAAGFRELDEVARRELMARIRADLVVAASLAPASPAGEALARLTEEMS 194
              LLH+FP EA+VA  F  LD+ A   L+A  R  L+ A + A      EA A + +   
Sbjct: 141  EALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLTATAAASDGELAEAFATVLDLAD 200

Query: 195  DSGLTGLIEAAVALRTRISPLGDTPAAR---RAAVARALGLPAGLTVTDVEAEMLASPHL 251
            D+GL  L+ A VA R  I    D  + R    A +  ALGL  G T   V A +     L
Sbjct: 201  DTGLEKLLAAIVANRAPIQAFLDHASGRGGMEAHLRAALGLEPGETAGTVMAAVWPLAGL 260

Query: 252  PRSEWESVAATLATSDKATDRKRADDLAAAAAAGDDASALAAYRGVFFGSDG-PRSDKNL 310
                 +           A     AD L A  A  D A+  +    +FF   G P+++   
Sbjct: 261  NGPALDDYIDLGLRLGGAKPSAIADGLRAVRAIDDAATRYSKLVELFFNGGGKPKAESAF 320

Query: 311  LTKGMGTREPDLLARFTAERDRLAGLDDRLKAAWTLERTGAALTLGAEACRRYEAEKAAR 370
            L   M    P L  R    R  +    DRL        T AAL L     R YEA K AR
Sbjct: 321  LNAAMRRAAPQLELRVEEARSHMLACVDRLSIVQMYGATRAALVLAERLNRDYEALKKAR 380

Query: 371  GLLDFDDLITKAAALLAEQP--TFVQFKLDQGIDHILVDEAQDTSPEQWKVVEGLTSDFF 428
              LDF+DLI + AALLA      +V +KLDQGIDHILVDEAQDTSP QW +++ L +DFF
Sbjct: 381  SQLDFEDLIHRTAALLARSDVGAWVHYKLDQGIDHILVDEAQDTSPAQWTIIQSLAADFF 440

Query: 429  SGEGARAGVTRTIFVVGDEKQSIFSFQGADPRAFGAMRSTFERKV--GAEGFRRVELPHS 486
            +GE ARA   RTIF VGDEKQSI+SFQGA P  F    +  ER+V  G + F  + L  S
Sbjct: 441  AGETARAD-DRTIFAVGDEKQSIYSFQGARPERFSRESTLTERRVRAGNKHFSPIRLQLS 499

Query: 487  FRSAPGVLEAVDAIFKSEVAHAGLTLDGVGPVHAAIRADAPALVEIWPTTVPEPHPEPDN 546
            FRS   VL AVD +F +     GL+      VHA+ R   P  V++W    PEP    ++
Sbjct: 500  FRSTVDVLSAVDTVFANPGNARGLSARSEAIVHASNRIGQPGAVDLWDVIAPEPAASEED 559

Query: 547  WRRPLDEVPSDDPVSRLAARIAGFIQAGIANGLAIPSRNGRPMRAGDVLVLVRRRGRVFE 606
            W  P D  P   PV+ LA RIA  ++  I     I     R MR GDV+VLVR+R     
Sbjct: 560  WTAPFDATPERAPVNILARRIAAVLEDWIGRETVIEKGVRRAMRPGDVIVLVRKRDAFVN 619

Query: 607  AVIRALKELKDPRVQVAGADRLVVPEHIAALDLMALGDALLSPHDDLSLASVLKSPLFGF 666
            A+ RALK  +   + VAGADRLV+  HIA  DL+ALG  +L P DDLSLA++LKSPL   
Sbjct: 620  ALTRALK--RRGNIPVAGADRLVLTSHIAVQDLIALGRFVLLPEDDLSLAALLKSPLLDL 677

Query: 667  TDDDLMALCPQRK-----GTLASVLATSDDTRHRAAAARLAGWKGEAEGLRPFDFYGRVL 721
             ++D+  L  +R                + +R+  A   L+ + G A  L P DFY RVL
Sbjct: 678  GEEDVFELAARRTEGESLWRRLRQAGAEETSRYHEAVRTLSRYSGLARELLPHDFYARVL 737

Query: 722  GRDGGRRAMLARLGPEAADVLDEFMALARTYEGAEPASLAGFLAFLRRGGAETKRDMESG 781
            G DGGRRA LARLG E +D+LDEF+  A  +E      L  F++ L       KR+ +  
Sbjct: 738  GADGGRRAFLARLGSEVSDILDEFLTFALDHERNGLPGLQAFISTLEIEAPTVKREQDKE 797

Query: 782  RDEVRVMTAHGAKGLEAPLVIL-------------ADTVDMPRPRIAGGLLTLPGEGVPV 828
            RDEVRVMT H AKGLEAP+V L             +D   + + ++    LT+P    P 
Sbjct: 798  RDEVRVMTVHAAKGLEAPVVFLVDGGGEAFVRQQVSDLRFLEKAQVDHSTLTVPVWRAPG 857

Query: 829  LAPRKAEDPEVLAAARATAAARELEEYRRLFYVALTRAEDALVICGAETRAPARDKPHAR 888
             AP       ++AA          EEYRRL YV +TRA D L++CG   +    D     
Sbjct: 858  SAPN-----SLIAADNERLKKLAEEEYRRLLYVGMTRAADRLIVCGYRGQRQNTD----- 907

Query: 889  PEGCWYDLARAALEPD-ADEGEPLGFEGKVLRWRKGPGLKVAETGAPVPAAVEEAEALSF 947
                W+ + +  L  D    G P  F      W +G   + A     +P +   +E    
Sbjct: 908  ---TWHSMVQGTLAQDLKGRGTPRLFRAGSEEW-QGIAWREAHVPRDLPTSEGRSEESQR 963

Query: 948  PN----------PPPPEPALRRLRPSGIDGADPRPERPAMPAPLPESALS----PLVRGD 993
            P           P  P    R L PSG   A   P+  A+      +  S     ++RG 
Sbjct: 964  PTAGLPTALFTPPAAPRRLPRPLAPSGTTIAIDDPDAEAIVGSALFAGKSAPKFSMLRGA 1023

Query: 994  LVHRLLAGLPEVAAAEREAAGLRLLRHAADGVDEAAHRAILAEALGVLGHAPLAELFGVG 1053
            ++HRLL  LP V   ER AA  R L  +     EA  RA+    + VL HA L  LFG  
Sbjct: 1024 ILHRLLQVLPSVDGPERLAAAERYLARSVPRWPEAERRALAGTVMDVLDHADLQPLFGEH 1083

Query: 1054 SRAEVPVIGRIAGGGGEVFAVNGRIDRLVVLPDRILVADFKTDRTPPTDPAEAGESYVSQ 1113
            SRAEV V+G +  G  E FAV+GRIDRL V  D + +AD+KT+R  P  P E    Y +Q
Sbjct: 1084 SRAEVSVMGTLKLGVRE-FAVSGRIDRLAVTGDMVTIADYKTNREIPETPEEIAPVYRNQ 1142

Query: 1114 LAVYGAILSQAFGGRPVEARLVYTAGPLVVPLAASRLGAALDRL 1157
            LA+Y  +L   + G+     L++T GP +  L    L  +L+ L
Sbjct: 1143 LAIYRELLKPLYPGKRFRCVLIFTEGPAIRVLPEPMLDRSLEEL 1186