Pairwise Alignments

Query, 345 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 87.0 bits (214), Expect = 6e-22
 Identities = 80/336 (23%), Positives = 141/336 (41%), Gaps = 29/336 (8%)

Query: 13  ALALSVATASAE--QITFVSQGGAYQEAQTKAILNPAAKLLGITINQDSAPDAWPVLKTQ 70
           AL+L   TA+AE  ++ F++ G          IL    K  GI +   S  ++   L  +
Sbjct: 14  ALSLLSGTAAAEDKELVFMNWGPYINSG----ILEQFTKETGIKVIY-STYESNETLYAK 68

Query: 71  AATGKPIWDVIDAPTTICVRGGDQGMVEKLDFSKIPTAASMPAQY-------KTPYSVAY 123
             T    +D++   T    +  D+GM++K+D SK+    ++ + Y          YS+ +
Sbjct: 69  LKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDKPYDPNNDYSIPH 128

Query: 124 EFYSSVLAYNKKKFASKAPQTWADFWDVKAFPGTRALRNHPQATMEAALLADGVPADKLY 183
               + LA N   +     Q+W D W  +   G   L +  +     AL   G   +   
Sbjct: 129 VVAITGLAVNTDMYDPNDFQSWGDLWKPE-LKGQLMLMDDTREVFHIALRKLGYSGNSTD 187

Query: 184 PLDVDRAFKKLEQIKPHITVWWTSGAQSAQLLADGEVDMEMAWNGRVAAVMKEGAPVSFT 243
              +D A+ +L+++ P++ V+ +    +  L   GEV + M WNG  AA  KEG P+   
Sbjct: 188 DKQIDEAYAELQKLMPNVLVFNSDNPAAPYL--SGEVGLGMLWNGSAAAAQKEGLPIKLV 245

Query: 244 FNQ--GLLQETSLCIVKGAPNLETAYKFVNAAMTPDIQANFPAYIDYGPGNPAAYATGKI 301
           F +  G+    +  I  GA N++ A+K ++  + P+I         Y  G     A+   
Sbjct: 246 FPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAEQISRDTGYLTG---VKASNDK 302

Query: 302 SPERATQMPSAPENAAKQVLVSQAWWASPAGEDAIK 337
             + A   PS  +       + +  W S  G+  +K
Sbjct: 303 FQDVAPLFPSQED-------LDRVEWQSAVGDKTVK 331