Pairwise Alignments

Query, 290 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

 Score =  170 bits (430), Expect = 4e-47
 Identities = 88/261 (33%), Positives = 143/261 (54%), Gaps = 18/261 (6%)

Query: 19  LVLLLLAPSLAVVGCLLIVPLCWLVWQSVRQDG-----AFTLAHYARFFSDAVYWTTFLQ 73
           LVL +L P+L ++G   +           R +      AFT  +Y R   D +Y    L 
Sbjct: 20  LVLFVLIPNLMIIGTSFLT----------RDEANLIKFAFTFENYTRLL-DPLYGKVMLH 68

Query: 74  TFRIAFIVTAVTVLLGYPIAYVAAGASRRWSIFILAMVILPFWTSVLVRAYAWLILLQRR 133
           +F +A + T + +++GYP AY+ A    +W  F+L ++I+PFWT+ L+R Y   I+L  +
Sbjct: 69  SFYMAIVATLICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPFWTNSLIRTYGLKIVLGTQ 128

Query: 134 GLVNSVLTDFGLIQNPLALVNNELGTVIATVHILLPFMVLPLYATMQKIPAELTMAGASL 193
           G++N  L   GLI  PL ++  E   +I  V+ILLPFM+LPLY+ ++K+      A   L
Sbjct: 129 GILNQALMSLGLIDAPLRIMFTETAVMIGLVYILLPFMILPLYSAIEKLDGTYIEAARDL 188

Query: 194 GGTPFYVFTRVFLPLSLPGVVAGMVLVFVLTLGFYITPELLGGGRTYMVSMLVSRNIEVY 253
           G   F    RV LPL++PG++ G +LV +  LG +   +LLGG +  ++  ++   +   
Sbjct: 189 GANKFQTLVRVILPLTMPGIIGGCLLVLLPALGMFYIADLLGGAKNLLIGNVIKSQVLNA 248

Query: 254 NEW--GAASSISIVLLACVFL 272
            +W  GAA+SI++ L   + L
Sbjct: 249 RDWPFGAATSIALTLAMAIML 269