Pairwise Alignments

Query, 385 a.a., Cytochrome bd-I ubiquinol oxidase subunit 2 from Xanthobacter sp. DMC5

Subject, 380 a.a., cytochrome d oxidase, subunit II (cydB) from Pseudomonas stutzeri RCH2

 Score =  383 bits (983), Expect = e-111
 Identities = 186/373 (49%), Positives = 244/373 (65%), Gaps = 2/373 (0%)

Query: 6   LIDYDALRVIWWLLLGVLLIGFAIMDGFDLGTGMLLPFVARTDLERRVVINTVGPVWEGN 65
           + DY+ L+++WW+L+GVLLIGFA+ DGFD+G   L+PFV +TD ERRV INT+ P W+GN
Sbjct: 1   MFDYEVLKLVWWVLIGVLLIGFALTDGFDMGAMALMPFVGKTDNERRVAINTIAPHWDGN 60

Query: 66  QVWLILGGGAIFAAWPPLYAVSFSGFYLAMFAILFALILRPVGFKYRSKREGAAWRTAWD 125
           QVW I  GGA+FAAWP +YAV+FSG Y AM  +LFAL  RPVGF YRSK E   WR+AWD
Sbjct: 61  QVWFITAGGALFAAWPMVYAVAFSGLYWAMLLVLFALFCRPVGFDYRSKVEDPRWRSAWD 120

Query: 126 WALFVGGLVPALVMGVAVGNVLQGVPFHLNDELRIFYDGTTLIELLNPYGLLCGLLSVAM 185
           WALFVGG VPALV GVA GN+  G+PF L++ +R  Y G +   LLNP+ LLCG++S++M
Sbjct: 121 WALFVGGAVPALVFGVAFGNLFLGLPFQLDELMRSTYQG-SFFALLNPFALLCGIVSLSM 179

Query: 186 LVMHGANWLVLKTEGEVEARARTIGSAAALVTALLFVLGGAWLYFGVSGYRIVGEIAKDG 245
           L  HG  WL+L+T+G +  R+R      ALV  + F+  G WL  GV G+  +       
Sbjct: 180 LSAHGGAWLMLRTDGALAERSRQATRLCALVFLVGFLAAGLWLMLGVQGFTQLSVTDPGA 239

Query: 246 PSNPLAKAAELSPHA-WFANYGARPWIIAGPLLGIAGALASFAALRARREIGAILASALA 304
             NPL     +  +A W  NYG  P  +  P+ GI GAL +           + + ++L 
Sbjct: 240 ALNPLLDKQVVQDNAGWLGNYGRYPITLIAPVAGILGALLALLGSSRNSGGASFVGTSLM 299

Query: 305 IFGIISTVGLSMFPFILPSSIDPRSSLIVWDASSSHLTLFIMLVCAVVFVPVILAYTTWV 364
           I G I T G ++FPF+ PSS+DP SSL +WDA SS  TL IM V A +FVP+IL YT W 
Sbjct: 300 IVGSICTAGFALFPFVFPSSLDPASSLTIWDAVSSKKTLGIMFVVACIFVPLILCYTLWS 359

Query: 365 YRVLWGKVDAKAI 377
           Y  +WG+++ K I
Sbjct: 360 YVRMWGRLNQKTI 372