Pairwise Alignments

Query, 311 a.a., HTH-type transcriptional regulator CdhR from Xanthobacter sp. DMC5

Subject, 332 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Pseudomonas stutzeri RCH2

 Score =  126 bits (317), Expect = 6e-34
 Identities = 80/249 (32%), Positives = 129/249 (51%), Gaps = 3/249 (1%)

Query: 61  RAADVVILPGWRNA--DEPVPEALVAELKAADARGALVVGLCLGAFGLAQAGLLNGRRAT 118
           R+  ++ILP    A  +  V +   A L      G  +  +C GAF LA+ GLL+GR  T
Sbjct: 74  RSPRIIILPPCLEARPEAHVIQPFAAWLGQCHQAGVTLGSVCAGAFLLAETGLLDGRTVT 133

Query: 119 THWARAQAFAERYPEVRVDAGALFVDEGQMLTSAGIAAGLDCCLHLLARLSGVGEANRVA 178
           THW  AQA  ER+P V+VDA  + VD+G ++T+ G+ A  D  L L+ RL G   A+  A
Sbjct: 134 THWGLAQALRERFPNVQVDADRMIVDDGDIITAGGLMAWTDLGLALVERLLGPTIASETA 193

Query: 179 RHLVVAPQRAGAQPQIIARPTIATPADQRVTELLETLRAAPSATPALDDLAVRMGMSRRS 238
           R+LV+   R   +      P +    D+ V  +   L++  ++   +  +A + GM  R+
Sbjct: 194 RYLVIDLTRQSQRYFSSFAPRL-DHGDEAVLRVQRWLQSQSASAVPVAAMAAQAGMGERT 252

Query: 239 LTRHIRARTGGSLGDWLKRARLAQAQDLLASGARGLDAIAQRCGFADAQALRLAFRSELG 298
             R  RA TG    ++ ++ R+ +A++LL    RG++ +A   G+ D  A R  F+  +G
Sbjct: 253 FLRRFRAATGLKPTEYCQQLRVGKARELLELTNRGIEQVAWAVGYQDPGAFRKVFQRLVG 312

Query: 299 TTPRQWLAR 307
            +P  +  R
Sbjct: 313 LSPGDYRRR 321