Pairwise Alignments

Query, 279 a.a., HTH-type transcriptional activator RhaS from Xanthobacter sp. DMC5

Subject, 287 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score = 55.1 bits (131), Expect = 2e-12
 Identities = 56/258 (21%), Positives = 113/258 (43%), Gaps = 16/258 (6%)

Query: 17  LLDMDRPLVRHAHPHCHVLLKVEGADTQFAVGEGLVPLTDRSCVLVNGWEPHAYVHDPNR 76
           L+ +   +  H H +  +++ ++G       G G +    + CV+ +G + HA+     +
Sbjct: 37  LITLPSHMACHDHSYTQIVIGLKGQAEFEVRGMGNIVGPGQGCVVTSGSD-HAFGGVVGQ 95

Query: 77  PKTIILALYI--EPDWLKTFRPGWVASGGAGFFAQPGGEVSPRIHRLTHDLAAAMMAEPD 134
              ++L + +  + D L   +   +A G   F      ++  +I RL   L   M A PD
Sbjct: 96  SDILVLNMPVPSDDDPLLLRKLNELAVGDVYF------QLDGQIQRLIQMLVQEMQASPD 149

Query: 135 AKAVHEALLADLMIAVVERFTPWRSFSIRALDGQRRMDWRIRRVVDGMRANLAEEVDTST 194
              +  A   D ++A+++R       ++ ++  + R D  +  V   +  +LA  +  + 
Sbjct: 150 DLLLGRAC-NDTVVALLQRHIS----ALASVHKESRFDMEV--VDRYIEQHLAHRISVAQ 202

Query: 195 LAKEAGLSRAHFFRLFEASTNVPPRIYLNVMRVEAAVAAVTAEDGSFTHISERLGFAAPS 254
           LA    LS + F  LF+    + P  Y+   RV+ A   +     +   ++E  GF+  S
Sbjct: 203 LAGSVFLSESQFHVLFKEQMGLTPHQYVLNKRVDMAKKLIEQGRLNLGQVAELTGFSNQS 262

Query: 255 HFTRFFRDHTGVTPSEFR 272
            FT  F    G++PS+++
Sbjct: 263 TFTHTFSRLHGISPSQYK 280