Pairwise Alignments

Query, 994 a.a., DNA polymerase I from Xanthobacter sp. DMC5

Subject, 934 a.a., DNA polymerase I from Vibrio cholerae E7946 ATCC 55056

 Score =  697 bits (1798), Expect = 0.0
 Identities = 417/998 (41%), Positives = 582/998 (58%), Gaps = 81/998 (8%)

Query: 10  PGDHVFLVDGSSFVFRAYFQSINQDRKYNFRSDRLPT----GAVRLFCTKLFQFVRDGAV 65
           P + + L+DGSS+++RA+             +  +PT    G V +  + + QF  D   
Sbjct: 5   PDNPLILIDGSSYLYRAFHAYPG-----TMSNGEIPTNAIYGVVNMIRSMMRQFASD--- 56

Query: 66  GIRPTHLAIVFDKSEDSFRKELYPDYKANRSEPPDELIPQFPLMREAVRAFGLIPVEQAR 125
                 +A++FD    +FR E+Y  YKA+R   PDEL  Q   + + +RA GL  +    
Sbjct: 57  -----RMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEG 111

Query: 126 YEADDIIATYAEQAVKAGADVLIVSADKDLMQLIGPKVAMYDPASGESGGRGARPERRIG 185
            EADD+I T A QA +AG  VLI + DKD+ QL+   + + +  +     R         
Sbjct: 112 VEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREG------- 164

Query: 186 LGEVVEYFGVPPEKVMDVQALAGDSTDNVPGVPGIGIKTAAQLIAEYGDLETLLARAGEI 245
              V+E FG+PPE ++D  AL GD  DN+PGVPG+G KTA  L+   G LE L A   +I
Sbjct: 165 ---VIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKI 221

Query: 246 KQPKRRES------LMNNQDAARISKQLVTLVRDVAVDVPLEDLVLEDPDARRLISFLKA 299
                R S      L  N+  A++S QL T+  DV ++   + L+ + PD   L+S    
Sbjct: 222 AALGFRGSKTMAQKLEENRGNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGK 281

Query: 300 MEFTTITRRVAEAYGVEAGEVDPDPKLAPSGGDLFAPGGEPAAEAGAKPAQPADATAAPS 359
           + F +    + +                  GG      G   A+   K +    +TAA  
Sbjct: 282 LAFKSWLTELLD------------------GGT-----GIVTADEQTKTSSVTVSTAATH 318

Query: 360 GTPTPSDLAHQRAQAARATPVDRKAYRTILDLAELKAWCAKAVDLGVVAFDTETNSLDPM 419
               P          + A  +DR  Y+TIL+  + + W  K     + AFDTET++LD M
Sbjct: 319 AAAIPE---------SPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYM 369

Query: 420 QADLVGVSLALSPNEACYIPLLHQGAGDGLFSEGLLPGQISLADAVAALKPMLEDKGTLK 479
            A+LVG+S A++  EA Y+P+ H             P Q+     +A LKP+LED+   K
Sbjct: 370 VANLVGMSFAVAEGEAAYLPVAHDYLD--------APQQLERDWVIAQLKPLLEDESKAK 421

Query: 480 IGHNVKYDELVLARHGIQVSPI-DCTMCMSYALDAGRNGHGMDELSVLHLGHQPIAYSEV 538
           +G N+KYD  V+AR+G+++  I   TM  SY  ++    H MD L++  L H  I++ +V
Sbjct: 422 VGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQV 481

Query: 539 TGKGKAQITFDKVALEPATAYAAEDADVTLRLWQVLKPRLAAEGRTT-VYETLERPLIPV 597
            GKGK Q+TF+++ALE A  YAAEDADVTLRL Q + P +  + +   VY  +E PL+PV
Sbjct: 482 AGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPV 541

Query: 598 LARMESRGIAIDKAILARLSSEFAQGAARVEDEIAELAGERLNVGSPKQMGDILFGKMGL 657
           L+R+E  G+ ID  +L+  S E A    ++E    ELAG+  N+ SPKQ+  ILF +M L
Sbjct: 542 LSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKL 601

Query: 658 PGGTKTATGMWSTKATALEELAELGHKLPQKILEWRQLSKLRSTYTDALPNFVHPQTKRV 717
           P   KT +G  ST    L+ELA L + LP+ ++E+R L+KL+STYTD LP  ++P T RV
Sbjct: 602 PVLQKTPSGTPSTNEEVLQELA-LDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 660

Query: 718 HTSYALAATTTGRLSSSDPNLQNIPVRTEEGRRIRRAFVAEEGNLLVSADYSQIELRLLA 777
           HTSY  A T TGRLSS+DPNLQNIPVR EEGRRIR+AFVA  G  +++ DYSQIELR++A
Sbjct: 661 HTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMA 720

Query: 778 EIAEIPALRQAFTDGLDIHAMTASEMFGVPVKDMPGEIRRRAKAINFGIIYGISAFGLAN 837
            ++   AL  AF DG DIHA TA+E+ GVP+  +  E RRRAKA+NFG+IYG+SAFGLA 
Sbjct: 721 HLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAK 780

Query: 838 QLGIPREEAGQYIKRYFERFPGIRDYMEETKTFCREHGYVETLFGRRCHYPDIAAKNPSL 897
           QLGIPR EA +Y+ +YFER+PG+  YME+T++   + GYVET+FGRR H P+I ++N   
Sbjct: 781 QLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMR 840

Query: 898 RAFNERAAINARLQGTAADIIRRAMIRMEPALEKAGLS-ARMLLQVHDELVFEVPEAEAE 956
           R   ERAAINA +QGTAADII++AM+ ++  +E+ G    ++L+QVHDELVFEV E+   
Sbjct: 841 RKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLS 900

Query: 957 ATIPVVRHAMESAAAPAVHLAVPLKVDARAAKNWEEAH 994
                V+  MESAA     LAVPL  +A    NWE+AH
Sbjct: 901 EIESKVQQLMESAA----ELAVPLVAEAGHGDNWEQAH 934