Pairwise Alignments

Query, 425 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 319 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  117 bits (292), Expect = 6e-31
 Identities = 79/176 (44%), Positives = 103/176 (58%), Gaps = 9/176 (5%)

Query: 212 LKEDVDRRLLVAATIDSLTGILNRRAFFEAARERLARAAGRGEPVSLLLVDIDHFKRVND 271
           LK +++  L +AA  D LT + NRRA+  A ++ + RA  +    SLLL+DID FK  ND
Sbjct: 145 LKTEMEN-LSLAAMTDQLTSLHNRRAYEIAIQDHIHRAEEQHTRCSLLLIDIDRFKVFND 203

Query: 272 TFGHPAGDEVLAAVTERLRRALRAHDLFGRVGGEEFAVLLPEAE-AEAIVVAE--RMRLA 328
           T+GH  GD+VLA V   L++ +R  D   R GGEEF VLLP     +A+ VAE  R R++
Sbjct: 204 TYGHQVGDKVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETLRGRIS 263

Query: 329 VRGLTTPATSRLD---CSVSIGCASVAAGERATIETLFRRGDAGLYAAKRAGRNRV 381
            R L      +L     +VSIG AS+  G+ A  ETLF R D  LY AK  GRN V
Sbjct: 264 ERRLAIGKDKKLSLGAITVSIGLASLQKGDDA--ETLFSRADKALYEAKSDGRNCV 317