Pairwise Alignments

Query, 285 a.a., Diaminopimelate epimerase from Xanthobacter sp. DMC5

Subject, 275 a.a., diaminopimelate epimerase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  152 bits (383), Expect = 1e-41
 Identities = 101/272 (37%), Positives = 127/272 (46%), Gaps = 6/272 (2%)

Query: 9   FVKMNGLGNEILVLDLRADPVEVPPAAARALA-RPSVLPFDQAMVLYPPRRADTAAFVRI 67
           F KM+GLGN+ +V+D     V   P   R LA R   + FDQ +++ PP   D     RI
Sbjct: 4   FTKMHGLGNDFMVVDGITQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRI 63

Query: 68  LNNDGSISAACGNGTRCIAALEAER--TGTPHILFESEAGLLDCTVRPDGQVKVDMGAPR 125
            N DG     CGNG RC A     +  T    I   + AG +   +  DG V V+MG P 
Sbjct: 64  FNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPV 123

Query: 126 LGWRDIPL-AHDVGDTASVLVPSFENLGPAVTVSMGNPHAIFFVSDADAMDVEGLGAALE 184
           L    IP  A     T  +  P    L  A   SMGNPH +  V D    +V  +GA L 
Sbjct: 124 LEPSQIPFKAKKAEKTYLLQTPQQTFLCGAA--SMGNPHCVLDVEDVANANVAEIGALLT 181

Query: 185 HHPLFPERANISFASLTAPDRILLHVWERGAGRTRACGTAACATGVAAVRTGRTGRAVTV 244
            H  FP   N+ F  +     I L V+ERGA  T ACGT ACA  V     G+  + V V
Sbjct: 182 KHERFPRGVNVGFMQVVNAGHIKLRVYERGAAETLACGTGACAAVVVGQIQGKLDQQVQV 241

Query: 245 TLPGGPLEIEWRESDGHVLMTGPVEHEFAGTL 276
            LPGG L I W      + MTGP +H + G +
Sbjct: 242 DLPGGSLTINWEGEGKPLWMTGPAQHVYDGQI 273