Pairwise Alignments

Query, 343 a.a., Spermidine/putrescine-binding periplasmic protein from Xanthobacter sp. DMC5

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 96.7 bits (239), Expect = 8e-25
 Identities = 98/328 (29%), Positives = 147/328 (44%), Gaps = 25/328 (7%)

Query: 9   GLALAAFVAGPASAAEK-LVVSTWGGSFRDLIAEAIASKFTKDTGVEVEYITGGTIDRL- 66
           GL L+A VA     AE+ L V  WGG     + E     F +  GV + Y T    + + 
Sbjct: 7   GLVLSAVVASSQVYAEQTLNVYAWGG----YLPEKSLKAFEQQEGVTINYSTFENNESMY 62

Query: 67  NKAKLAKGSPESDITFTTAHVGWLYANDDLFETLDLSKMPNASKLVPQA---KVSPYHIG 123
            K KL KG+   D+ F +A+       + L   +D +++PN    +P        P +  
Sbjct: 63  TKLKLLKGTGY-DVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLAHDPQNKF 121

Query: 124 AWAYVYTIG---YRPDLTPKNINFSSWADLWNPELKGMLAAPDFDPSHIIAVSALLAGGS 180
           +  Y++ I    Y     P  I  + WADLW+ + +  +   D D   +  ++  L G S
Sbjct: 122 SLPYIWGITGLYYNSSTLPNGI--TKWADLWDKQYEQQVMLID-DIRDVFGMALKLNGFS 178

Query: 181 -----PADWQKGEQKLLALKPNFKAFYTNDANSQQLIATGETPVQIMLSMNAYYMIAQGV 235
                  + +K  + L+ALK N    Y +DA     ++ GE  + +  + NAY    +  
Sbjct: 179 INTKNEEEIKKAYESLVALKKNV-LLYNSDAPHVPYVS-GEATLGMQWNGNAYQGQVEMP 236

Query: 236 PIKLVIPKEGGVLGIDTMAIMKGSKNRELAEKFINTALDPEVQGKIAE-LKKGSPTVLG- 293
            +K V+P+EG VL +D   I  GSKN  LA KFIN    PE Q +I + L   S T  G 
Sbjct: 237 ELKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLGYASATKGGR 296

Query: 294 AKVSAETAKLPGVFTTAEQWDKETIIID 321
           A + AE    P +F + E   K   I D
Sbjct: 297 ALLPAELRDNPTIFPSDEDMKKGEFIND 324