Pairwise Alignments

Query, 343 a.a., Spermidine/putrescine-binding periplasmic protein from Xanthobacter sp. DMC5

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  105 bits (262), Expect = 2e-27
 Identities = 96/335 (28%), Positives = 156/335 (46%), Gaps = 26/335 (7%)

Query: 14  AFVAGPASAAEK-LVVSTWGGSFRDLIAEAIASKFTKDTGVEVEYITGGTIDRLNKAKLA 72
           + ++G A+A +K LV   WG      I   I  +FTK+TG++V Y T  + + L  AKL 
Sbjct: 16  SLLSGTAAAEDKELVFMNWG----PYINSGILEQFTKETGIKVIYSTYESNETLY-AKLK 70

Query: 73  KGSPESDITFTTAHVGWLYANDDLFETLDLSKMPNASKL------VPQAKVSPYHIGAWA 126
             +   D+   + +      ++ + + +D SK+ N   L       P    + Y I    
Sbjct: 71  THNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDKPYDPNNDYSIPHVV 130

Query: 127 YVYTIGYRPDLTPKNINFSSWADLWNPELKGMLAAPDF--DPSHIIAVSALLAGGSPADW 184
            +  +    D+   N +F SW DLW PELKG L   D   +  HI       +G S  D 
Sbjct: 131 AITGLAVNTDMYDPN-DFQSWGDLWKPELKGQLMLMDDTREVFHIALRKLGYSGNSTDDK 189

Query: 185 QKGEQ--KLLALKPNFKAFYTNDANSQQLIATGETPVQIMLSMNAYYMIAQGVPIKLVIP 242
           Q  E   +L  L PN   F  N  N      +GE  + ++ + +A     +G+PIKLV P
Sbjct: 190 QIDEAYAELQKLMPNVLVF--NSDNPAAPYLSGEVGLGMLWNGSAAAAQKEGLPIKLVFP 247

Query: 243 KEGGVLGIDTMAIMKGSKNRELAEKFINTALDPEVQGKIAELKKGSPTVLGAKVSAETAK 302
           KEGG+  +D  AI  G+KN + A K I+  L PE+  +I+   + +  + G K S +  +
Sbjct: 248 KEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAEQIS---RDTGYLTGVKASNDKFQ 304

Query: 303 -LPGVFTTAEQWDKETIIIDHKLRAEKTAEWRKWF 336
            +  +F + E  D+   +       +KT ++ ++F
Sbjct: 305 DVAPLFPSQEDLDR---VEWQSAVGDKTVKYEEYF 336