Pairwise Alignments

Query, 343 a.a., Spermidine/putrescine-binding periplasmic protein from Xanthobacter sp. DMC5

Subject, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 88.2 bits (217), Expect = 3e-22
 Identities = 81/302 (26%), Positives = 136/302 (45%), Gaps = 22/302 (7%)

Query: 1   MNGKIVALGLALAA-FVAGPASAAEKLVVSTWGGSFRDLIAEAIASKFTKDTGVEVEYIT 59
           M  K+ A  L  AA F     +  ++L    W     + I   +   FTK+TG++V Y T
Sbjct: 1   MKNKLFASALCAAALFTTNAMAKDQELYFYNWS----EYIPSEVLEDFTKETGIKVIYST 56

Query: 60  GGTIDRLNKAKLAKGSPESDITFTTAHVGWLYANDDLFETLDLSKMPNASKLVPQAKVSP 119
             + + +  AKL       D+   + +       + + + +D SK+ +   L P     P
Sbjct: 57  YESNESMY-AKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLNKP 115

Query: 120 YHIG---AWAYVYT---IGYRPDLTPKNINFSSWADLWNPELKGMLAAPDFDPSHIIAVS 173
           +  G   +  Y++    IG   D+  K  +  +W DLW+ +  G L   D D   +  ++
Sbjct: 116 FDPGNKFSIPYIWGATGIGINTDMLDKK-SLKNWGDLWDAKWAGQLMLMD-DAREVFHIA 173

Query: 174 ALLAGGSPADWQKGEQK-----LLALKPNFKAFYTNDANSQQLIATGETPVQIMLSMNAY 228
               G SP      E K     L  L PN   F ++   +  L   GE  + ++ + +AY
Sbjct: 174 LSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYL--AGEVSLGMLWNGSAY 231

Query: 229 YMIAQGVPIKLVIPKEGGVLGIDTMAIMKGSKNRELAEKFINTALDPEVQGKIAELKKGS 288
               +G PI+++ P++G +  +D+++I  G+KN E A K I+  L PE   KIA L+ G 
Sbjct: 232 MARQEGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIA-LEIGY 290

Query: 289 PT 290
           PT
Sbjct: 291 PT 292