Pairwise Alignments

Query, 343 a.a., Spermidine/putrescine-binding periplasmic protein from Xanthobacter sp. DMC5

Subject, 367 a.a., polyamine ABC transporter, periplasmic polyamine-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 65.9 bits (159), Expect = 2e-15
 Identities = 95/364 (26%), Positives = 146/364 (40%), Gaps = 40/364 (10%)

Query: 4   KIVALGLALAAFVAGPASAAEKLV-VSTWGGSFRDLIAEAIASKFTKDTGVEVEYITGGT 62
           K+  L L  A  +A  A  AE++V +  W     D IAE     F K+TG+ V Y    +
Sbjct: 6   KMTTLALVTAGTLASVAVQAEEVVRMYNWS----DYIAEDTLENFKKETGIRVIYDVFDS 61

Query: 63  IDRLNKAKLAKGSPESDITFTTAHVGWLYANDDLFETLDLSKMPNASKLVPQA-----KV 117
            + + +AKL  G    DI   + H          F+ LD SK+ N   L         K 
Sbjct: 62  -NEVVEAKLLSGRSGYDIVVPSNHFLAKQIKAGAFKPLDRSKLTNFKNLNADLMKLLEKA 120

Query: 118 SPYHIGAWAYVYT---IGYRPDLTPKNIN-----FSSWADLWNPELKGMLA--------- 160
            P +  A  Y++    IGY  +     +      F+S   ++NP+    ++         
Sbjct: 121 DPGNQYAVPYLWGTNGIGYNINKVKAAVGEDAPPFNSMELIFNPKYAEKISKCGFAMLDS 180

Query: 161 APDFDPSHIIAVSALLAGGSPADWQKGEQKLLALKPNFKAFYTNDANSQQLIATGETPVQ 220
           A D  P  +I +          D++K  + L  ++P    F+++   S   +A G+  V 
Sbjct: 181 ADDMVPQAMIYLGLDPNSTKAEDYEKAGELLEKIRPYVTYFHSSRYISD--LANGDICVA 238

Query: 221 IMLSMNAYYMIAQ------GVPIKLVIPKEGGVLGIDTMAIMKGSKNRELAEKFINTALD 274
              S + +   A+      G  I   IPKEG  L  D +AI   + N E A K IN  L 
Sbjct: 239 YGFSGDVFQAAARADEAGNGNKIGYSIPKEGANLWFDMLAIPADATNVENAHKLINYLLR 298

Query: 275 PEVQGKIAE-LKKGSPTVLGAKVSAETAKL-PGVFTTAEQWDKETI--IIDHKLRAEKTA 330
           PEV   I+  +   +P  L   +  E  +  P ++   E  DK  I  I   K++   T 
Sbjct: 299 PEVIAPISNYVAYANPNDLAQPLVDEAIRNDPAIYPPKEVLDKLYIGEIRPLKIQRVLTR 358

Query: 331 EWRK 334
            W K
Sbjct: 359 VWTK 362