Pairwise Alignments
Query, 609 a.a., ABC transporter ATP-binding protein uup from Xanthobacter sp. DMC5
Subject, 555 a.a., energy-dependent translational throttle protein EttA from Vibrio cholerae E7946 ATCC 55056
Score = 272 bits (695), Expect = 3e-77
Identities = 169/516 (32%), Positives = 261/516 (50%), Gaps = 49/516 (9%)
Query: 20 LLDGAELSVSAGERVCLVGRNGSGKSTLLKVAAGLVEPDSGTRFFQPGTTVRYLQQEPDF 79
+L LS G ++ ++G NG+GKSTLL++ AG+ + G QPG V YL QEP
Sbjct: 21 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIDGEARPQPGLKVGYLPQEPKL 80
Query: 80 SGYATTLAYVEAGLGPGDDAYRAQYLLTELGLTGQEDP---------------------- 117
T VE + D AY + L + D
Sbjct: 81 DESKTVREVVEEAVA--DVAYALKRLDEVYAAYAEPDADFDALAKEQGELEALIQAKNGH 138
Query: 118 ----------------------AHLSGGEARRAALARVIAPEPDVLLLDEPTNHLDLPAI 155
+LSGGE RR A+ R++ PD+LLLDEPTNHLD ++
Sbjct: 139 NLDNALERAADALRLPEWDAQVKYLSGGERRRVAICRLLLENPDMLLLDEPTNHLDAESV 198
Query: 156 EWLESELKGLKSAMVLISHDRRFLETLSRATVWLDRGQTRRLEQGFGAFEAWRDEVLEQE 215
WLE L +V I+HDR FL+ + + LDRG+ + + ++ +D L+QE
Sbjct: 199 AWLERFLVDYAGTVVAITHDRYFLDNAAGWILELDRGEGIPWQGNYTSWLEQKDARLKQE 258
Query: 216 ETERHKLDRKIVAELDWLRYGVTARRKRNVRRLGLLHSMRKDRRDERRAVGNVKLAVSEA 275
++ + I EL+W+R R+ ++ R+ ++ +R +L +
Sbjct: 259 ASQEKARQKTIEKELEWVRQNPKGRQAKSKARMARFEELQNTEHQKRNETN--ELFIPPG 316
Query: 276 EASGKLVIEAKHIAKAFGEREVVKDFSTRILRGDRIGIIGPNGAGKTTLIKLLTGELAPD 335
E G VIE K++ K+F R ++ D S + +G +GIIGPNGAGK+TL K+L+G PD
Sbjct: 317 ERLGDKVIEVKNLTKSFDGRVLIDDLSFSMPKGAIVGIIGPNGAGKSTLFKMLSGVEKPD 376
Query: 336 SGTVKLGTNLEVASLDQKRAALDPGTTLRDALTGGGSDQVQVGGAPKHVMGYLKDFLFTP 395
SGT++LG +++AS+DQ R +++ T+ ++ G+D +++ Y F F
Sbjct: 377 SGTIELGDTVKLASVDQFRDSMNDKHTVFQEIS-EGADIIRINNFEIPARAYCSRFNFKG 435
Query: 396 EQANAPLSVLSGGERGRLMLARALALPSNVLVLDEPTNDLDLETLDLLQEMVADYPGTVI 455
+ LSGGER R+ LA+ L NVL+LDEPTNDLD+ETL L+E + ++PG +
Sbjct: 436 VDQQKVIGELSGGERNRVHLAKLLKAGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAM 495
Query: 456 LVSHDRDFLDRTVSSVIMAEGDGVFREYAGGYSDML 491
++SHDR FLDR + ++ +G Y G Y++ +
Sbjct: 496 VISHDRWFLDRIATHILDYRDEGKVNFYEGNYTEYM 531
Score = 100 bits (250), Expect = 1e-25
Identities = 79/284 (27%), Positives = 135/284 (47%), Gaps = 43/284 (15%)
Query: 294 EREVVKDFSTRILRGDRIGIIGPNGAGKTTLIKLLTGELAPDSGTVKLGTNLEVASLDQK 353
+R+++KD S G +IG++G NGAGK+TL++++ G G + L+V L Q+
Sbjct: 18 KRQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIDGEARPQPGLKVGYLPQE 77
Query: 354 RAALDPGTTLRDALTGGGSD------------------------------------QVQV 377
LD T+R+ + +D Q +
Sbjct: 78 -PKLDESKTVREVVEEAVADVAYALKRLDEVYAAYAEPDADFDALAKEQGELEALIQAKN 136
Query: 378 GGAPKHVMGYLKDFLFTPEQANAPLSVLSGGERGRLMLARALALPSNVLVLDEPTNDLDL 437
G + + D L PE +A + LSGGER R+ + R L ++L+LDEPTN LD
Sbjct: 137 GHNLDNALERAADALRLPEW-DAQVKYLSGGERRRVAICRLLLENPDMLLLDEPTNHLDA 195
Query: 438 ETLDLLQEMVADYPGTVILVSHDRDFLDRTVSSVI-MAEGDGVFREYAGGYSDMLSQRGR 496
E++ L+ + DY GTV+ ++HDR FLD ++ + G+G+ + G Y+ L Q+
Sbjct: 196 ESVAWLERFLVDYAGTVVAITHDRYFLDNAAGWILELDRGEGI--PWQGNYTSWLEQKDA 253
Query: 497 GVEARDKSAPAAKAKGGEQKPD-AGKGTGGAAAGGKRRLSFHEQ 539
++ ++ S A+ K E++ + + G A K R++ E+
Sbjct: 254 RLK-QEASQEKARQKTIEKELEWVRQNPKGRQAKSKARMARFEE 296
Score = 95.9 bits (237), Expect = 4e-24
Identities = 69/236 (29%), Positives = 111/236 (47%), Gaps = 14/236 (5%)
Query: 5 LVLLQDIHLRFGATPLLDGAELSVSAGERVCLVGRNGSGKSTLLKVAAGLVEPDSGTRFF 64
++ ++++ F L+D S+ G V ++G NG+GKSTL K+ +G+ +PDSGT
Sbjct: 323 VIEVKNLTKSFDGRVLIDDLSFSMPKGAIVGIIGPNGAGKSTLFKMLSGVEKPDSGT--I 380
Query: 65 QPGTTVRYLQQEPDFSGYATTLAYVEAGLGPGDDAYRAQYL----------LTELGLTGQ 114
+ G TV+ L F V + G D R G+ Q
Sbjct: 381 ELGDTVK-LASVDQFRDSMNDKHTVFQEISEGADIIRINNFEIPARAYCSRFNFKGVDQQ 439
Query: 115 EDPAHLSGGEARRAALARVIAPEPDVLLLDEPTNHLDLPAIEWLESELKGLKSAMVLISH 174
+ LSGGE R LA+++ +VLLLDEPTN LD+ + LE L ++ISH
Sbjct: 440 KVIGELSGGERNRVHLAKLLKAGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAMVISH 499
Query: 175 DRRFLETLSRATV-WLDRGQTRRLEQGFGAFEAWRDEVLEQEETERHKLDRKIVAE 229
DR FL+ ++ + + D G+ E + + W + L + E H++ K + +
Sbjct: 500 DRWFLDRIATHILDYRDEGKVNFYEGNYTEYMEWLKQTLGAQAAEPHRIKYKRITK 555