Pairwise Alignments

Query, 279 a.a., Inner membrane ABC transporter permease protein YcjP from Xanthobacter sp. DMC5

Subject, 275 a.a., permease protein of sugar ABC transporter from Synechococcus elongatus PCC 7942

 Score =  154 bits (389), Expect = 2e-42
 Identities = 85/266 (31%), Positives = 147/266 (55%), Gaps = 4/266 (1%)

Query: 18  AATLIAVYSAFPIYWMVVSSTRAPQALINSTSLL-PGPFTWEYYTNLLELTD-YPSQFLN 75
           AA  ++++S  PI W +++S +    +    ++  P  +T E+Y  L + T  +    LN
Sbjct: 10  AALALSLFSLAPILWQLLTSIKVNADIAAIPTIYWPRQWTVEHYQALWQQTPAFGRYLLN 69

Query: 76  SLIVAAVTVVVTMVFSIMIAYAVTRHRIRGKGIIVGAMLYAYMFPPLLIAIPMFSIFAKL 135
           S +V+A+  +  ++     AYA+ R R R   ++VG++L   +FP +L+   +  +   L
Sbjct: 70  SAVVSAIATLAALLIGTPCAYAIARRRDRSSQVLVGSLLLVTLFPYVLLFQGLLEVVRWL 129

Query: 136 GLGDTLTSVIVSHLTLTLPLGVWFLWGFFKSMPFELEEAAMVDGCTRLGAFLRVVLPLSL 195
             G+   +++V +  L LPL +  L  FF+ +P ELEEAA +DG +       +++PL+ 
Sbjct: 130 QWGNNYAALVVPYTALNLPLVILLLRSFFEQLPPELEEAAQIDGLSLGQRLWLILVPLTA 189

Query: 196 PGLITVAIFSFLLSWTDYTYALIMIGSDANKTVPVGLASM--VGSFDLRWGEIMAGSTLI 253
           P L+T  I +F+ SW +Y  AL  I   A KTVP+ +A +  +  FD+ +G+I A + + 
Sbjct: 190 PALVTAGILAFIFSWNEYVLALSFISQQALKTVPIAVAEIGGISIFDVPYGDIAAATVVA 249

Query: 254 ALPLFGAFALLSQYFIQGLGAGAVKG 279
            LPL G   +  +  ++GL AGAVKG
Sbjct: 250 TLPLIGLVLVAQRRILEGLTAGAVKG 275