Pairwise Alignments

Query, 186 a.a., RNA polymerase sigma-H factor from Xanthobacter sp. DMC5

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 90.9 bits (224), Expect = 1e-23
 Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 5   SDEDLMSAIAAGDEAAFRVLCQRYAVRAVAFARRFVGSGTDAEDVAQEALLRVWRAAPRW 64
           +D+ L+  +  GD+ AF +L  RY  +      R+V +  D  DVAQEA ++ +RA P +
Sbjct: 6   TDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTF 65

Query: 65  RPDAAFGTWFYRIVINLCLN----ARRRLPFLGLDAAGERADPAPDALAGLERQEE---- 116
           R ++AF TW YRI +N   N      RR P   +DA         DAL  L   E     
Sbjct: 66  RGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPENITLS 125

Query: 117 ---DRALLDAVAALPERQRMAILLTYWEGFSNAHAAEILGTSVSGVETLLVRARRSL 170
               + + DA+ ALP+  + A+ L   +G S    AE++   V  V + + RAR ++
Sbjct: 126 KELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAV 182