Pairwise Alignments

Query, 186 a.a., RNA polymerase sigma-H factor from Xanthobacter sp. DMC5

Subject, 227 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

 Score = 73.9 bits (180), Expect = 2e-18
 Identities = 57/172 (33%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 15  AGDEAAFRVLCQRYAVRAVAFARRFVGSGTDAEDVAQEALLRVWRAAPRWRPDAAFGTWF 74
           A D A FR + Q +  +    AR  + + +DAEDV QEA +R +     +R DAA  TW 
Sbjct: 16  AQDLARFRAIMQAHNRKLYRIARSILRNDSDAEDVLQEAYVRAFTRFEDFRGDAAITTWL 75

Query: 75  YRIVINLCL----NARRRLPFLGLDAAGERAD----PAPDALAGLERQEEDRALLDAVAA 126
            RIVIN  L      RR++         + A+    P    ++  E+    R +LD V  
Sbjct: 76  ARIVINEALGRLRKGRRQMRLAKYMRQSQEAEIIAFPLNSGISDPEKTMAQRQILDLVER 135

Query: 127 ----LPERQRMAILLTYWEGFSNAHAAEILGTSVSGVETLLVRARRSLRLSL 174
               LP+  R   +L   EG  N  AA +LG       T L RARR L+  L
Sbjct: 136 LTDDLPDTYRTVFVLRVIEGLDNEEAAALLGLKPETARTRLHRARRILKEQL 187