Pairwise Alignments

Query, 186 a.a., RNA polymerase sigma-H factor from Xanthobacter sp. DMC5

Subject, 206 a.a., Sigma-24 (FecI) (NCBI) from Rhodospirillum rubrum S1H

 Score = 80.5 bits (197), Expect = 2e-20
 Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 4/171 (2%)

Query: 9   LMSAIA-AGDEAAFRVLCQRYAVRAVAFARRFVGSGTDAEDVAQEALLRVWRAAPRWRP- 66
           L+ AIA +GD AAF  L   YA R  ++ RR   +   AE+VAQEALL VWR A R+ P 
Sbjct: 32  LIVAIARSGDRAAFATLFTHYAPRLKSYLRRLGANDASAEEVAQEALLMVWRKAERFDPT 91

Query: 67  DAAFGTWFYRIVINLCLNARRRLPFLGLDAAGERADP-APDALAGL-ERQEEDRALLDAV 124
            A   TW + I  NL ++  R+     +D      +P +PDA   L E+ + +  +  A+
Sbjct: 92  KAGAATWIFTIARNLRIDMLRKERRPEIDPEDPLLEPSSPDAADILIEKDQRETRVRTAL 151

Query: 125 AALPERQRMAILLTYWEGFSNAHAAEILGTSVSGVETLLVRARRSLRLSLG 175
            +LP  Q   + L ++E  ++   A+ LG  +  V++ L  A   +R S+G
Sbjct: 152 RSLPADQAEVVRLAFFEDLTHVEVADRLGLPLGTVKSRLRLAFSKVRGSVG 202