Pairwise Alignments

Query, 335 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 407 a.a., proline/arginine ABC transporter, permease component (from data) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  137 bits (345), Expect = 5e-37
 Identities = 89/302 (29%), Positives = 154/302 (50%), Gaps = 9/302 (2%)

Query: 26  RWRVPLTIAVL---AVLPFVLPSQA--LAVNVLIYGLFTVGFNLLFGYTGLLSFGHAAFF 80
           R R P  +AVL   AVLP ++ +    + ++ L+Y +  +G N++ G +G L  G+ AF+
Sbjct: 87  RLRTPALLAVLVVFAVLPMLVSTYQTNIMISALLYVMLGLGLNIVVGLSGQLVLGYVAFY 146

Query: 81  GTGAYLTGMAIAHLGFGWFPAMLTGIVGASLLSAVIGALSIRTRGIYFCMVTLALAQLVY 140
             GAY   +  A  G G++  +  G   A++   ++G   +R +G Y  +VTL   ++V 
Sbjct: 147 AVGAYAYALLNADFGLGFWTVLPIGGALAAVFGILLGFPVLRLKGDYLAIVTLGFGEIVR 206

Query: 141 YVALQASGWTGGENGLRGFTVAKADLIG-GFSVNLLNPLAKYYFIMFFAALALWFVSRVL 199
            V       T G +G+    +A+  L G   SV+       YY I+      ++ V R+ 
Sbjct: 207 LVLENWGSVTRGPSGIS--KIARPGLFGMELSVSEATTYI-YYLILAAVIFTIFAVGRLK 263

Query: 200 NSPFGAAIEAVRENETRARACGFDVERTKLLSFILSGALCGLAGTLSALHLSIVPLDALS 259
           +S  G A +A+RE+E    A G D+  TKL +F L     G AG + A   + +   + +
Sbjct: 264 DSRIGRAWQALREDEIACEAMGIDLTTTKLTAFALGACWAGFAGVIFAAKTTFINPASFT 323

Query: 260 VHTSSIVVMMTMLGGAGSFFGPFVGALVFLLIEDVASLWTTHWQLIVGIVFILFVLFLPK 319
              S++++ M +LGG GS  G  +GALV +L+ +    ++ +  LI G   +L ++F P+
Sbjct: 324 FLESAMILAMVVLGGMGSTLGVVLGALVLILLPEYLRAFSEYRMLIFGAAMVLMMVFRPQ 383

Query: 320 GI 321
           G+
Sbjct: 384 GL 385