Pairwise Alignments

Query, 293 a.a., HTH-type transcriptional regulator YofA from Xanthobacter sp. DMC5

Subject, 307 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  127 bits (319), Expect = 3e-34
 Identities = 89/238 (37%), Positives = 128/238 (53%), Gaps = 5/238 (2%)

Query: 3   AMLDPDQLKTFVAIAETGSFTKAAEVVHKTQSAVSMQMKRLEERVGRPVFVRDGRASRLT 62
           A+LDP  L+ FVA+A++GSFT+AA   H TQS VS Q+KRLE+++G  +  R GR +  T
Sbjct: 16  ALLDPVLLRAFVAVADSGSFTRAAAATHLTQSTVSQQLKRLEQQLGCELLSRKGRYAMPT 75

Query: 63  EDGERLLDYARRIVKLNMEAVSSFADAELSGRVCLGVPDDYADRYLPDIMARFSRTHPSV 122
            DGERLL YAR+I+ L  EA  + A   L   + L V +D+A   L  I+ +     PSV
Sbjct: 76  ADGERLLGYARQILALMAEAGMTPAQPPL---LRLAVAEDFAGTALMPILKKLITRFPSV 132

Query: 123 ELTVICEPTAELVQYIASGTIDLAIITATEITSRNAHVIRRERLLWVSSAR-HAAHLETP 181
           +L V    +  L Q    G ++LA+I   +     A     E L W+++A   A     P
Sbjct: 133 KLEVQSGLSKPLYQAFQEGVVELALIKQRQ-GEHPAKACWPEALSWLAAADWQAVKAGEP 191

Query: 182 VPLALGRPTCQWREIAVSRLAGAGRGHRILYTSPNCGAVVAAVLSGLAVSVLPESALR 239
           VPL        +R      L  AG   R++Y+S +   V+ AV +G+ VS+LP   +R
Sbjct: 192 VPLIAFPAGGLYRNEMAQLLDEAGIPWRLVYSSNSLEGVLCAVAAGMGVSLLPSRFIR 249