Pairwise Alignments

Query, 541 a.a., Cytochrome c oxidase subunit 1 from Xanthobacter sp. DMC5

Subject, 536 a.a., cytochrome-c oxidase (RefSeq) from Shewanella loihica PV-4

 Score =  611 bits (1576), Expect = e-179
 Identities = 295/533 (55%), Positives = 375/533 (70%), Gaps = 9/533 (1%)

Query: 9   SHHDDHDTHDSHIPTGWKRWVFSTNHKDIGVMYLIFAIVAGIVGGALSIAIRMELQEPGL 68
           +H  +H TH    PTG KRW+F+TNHKDIG +YL F+ +  + GGA+++ IR EL +PGL
Sbjct: 13  THIGEHSTHHEEHPTGIKRWLFTTNHKDIGTLYLWFSFIMFLTGGAMAMVIRAELFQPGL 72

Query: 69  QIFKDPQTFNVFTTGHGLIMIFFMVMPALIGGYGNYFAPLMIGAPDTAFPRINNIAFWLL 128
           Q+  +P  FN  TT HGLIM+F  VMPA  G   N+  P+MIGAPD A PR+NN +FW+L
Sbjct: 73  QLV-EPNFFNQMTTVHGLIMVFGAVMPAFTG-LANWLIPMMIGAPDMALPRMNNWSFWIL 130

Query: 129 PPAFILALSSLFVEGAPGTNGFGGGWTIYPPLSSKLGHPGPAMDLLIFSLHIAGASSLLG 188
           P AF + LSSLF+EG     G   GWT Y PLS+       A  L +FS+HI G SS++G
Sbjct: 131 PFAFAILLSSLFMEGG----GPNFGWTFYAPLSTAYSPDSTA--LFVFSVHIMGISSIMG 184

Query: 189 AINLITTIFNMRAPGMTLHKMPLFAWSQLITGFLLLLSLPVLAGAITMLLTDRNFGTTFF 248
           AIN+I TI NMRAPGM+  K+PLF W+ LIT FLL+  +PVLAG +TM+LTD+ FGT+FF
Sbjct: 185 AINVIVTIVNMRAPGMSWMKLPLFVWTWLITAFLLIAVMPVLAGTVTMVLTDKFFGTSFF 244

Query: 249 DPAGGGDPILFQHLFWFFGHPEVYILILPGFGLISHIISTFSRKPVFGYLGMAYAMVAIG 308
           D AGGGDP++FQH+FWFFGHPEVYI+ILP FG+IS I+  FSRK +FGY  M YA  +I 
Sbjct: 245 DAAGGGDPVMFQHIFWFFGHPEVYIMILPSFGIISAIVPAFSRKKLFGYSSMVYATASIA 304

Query: 309 VVGFVVWAHHMYTVGLSSGTQSYFVAATMIIAVPTGVKIFSWIATMWGGSIQFRTPMLWA 368
           ++ F+VWAHHM+T G+    + +F+  TM+IAVPTGVK+F+W+AT+W GS+ F TPML+A
Sbjct: 305 ILSFLVWAHHMFTTGMPVFAELFFMYCTMLIAVPTGVKVFNWVATLWRGSLTFETPMLFA 364

Query: 369 IGFIFLFTVGGVTGVVLSNAGIDRSLHDTYYVVAHFHYVLSLGAVFAIFAGWYYWFPKMF 428
           + FI LFT+GG +G++L+   +D   HDTY+VVAHFHYVL  GA+F+I A  YYW PK  
Sbjct: 365 LAFIILFTIGGFSGLMLAITPVDFQYHDTYFVVAHFHYVLVSGAIFSIMAAAYYWLPKWT 424

Query: 429 GYMIPEFWGKLHFWVTFIGVNLVFFPQHFLGLAGMPRRYADYPDAFAHWNFVSSIGSYIS 488
           G+M  E  GKLHFW + I VN++FFP HFLGLAGMPRR  DY   FA  N + SIG +  
Sbjct: 425 GHMYSEKLGKLHFWCSVISVNVLFFPMHFLGLAGMPRRIPDYSIQFADVNQIVSIGGFAF 484

Query: 489 GIAVLIFLTGTTLAFLRKEKAADNPWGEGATTLEWTLSSPPPYHQFEVLPRIK 541
           G++ LIFL          E A   PW +GA  LEWTL SP PYH F   P +K
Sbjct: 485 GLSQLIFLVVVIKCIRGGEPAPSKPW-DGAEGLEWTLPSPAPYHSFSTPPEVK 536