Pairwise Alignments

Query, 401 a.a., NADH-quinone oxidoreductase subunit D from Xanthobacter sp. DMC5

Subject, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

 Score =  126 bits (316), Expect = 1e-33
 Identities = 98/382 (25%), Positives = 179/382 (46%), Gaps = 41/382 (10%)

Query: 18  INFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEAKTYLQAVPYFDRLDY 77
           +  GP HP     LR+ L ++GE V+  +  +G +HRG E+++E K YL+ +   +R+  
Sbjct: 4   VPIGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVCG 63

Query: 78  CAPMNQEHAYCLAVEKLLGIEVPKRGQLIRVLYSEIGRLLSHLLNVTTFAMDVGALTPPL 137
                   ++   +E +  IEVP++ + +RV+  E+ R+ SHL+    + + +   T  +
Sbjct: 64  ICSYIHTQSFAECIENMCDIEVPEKAKYLRVITCELERIHSHLIAAAVYNLTIEHETLGI 123

Query: 138 WGFEEREKLMIFYERASGSRMHAAYFRPGGVHQDLPRQLVEDIGAFCDPFLKLVADLDAL 197
           W    RE +M   E  +G+R++  +   GGV  DL +++++ I    D F + V ++  +
Sbjct: 124 WMLNVRESIMDLLELITGNRVNMGFNVVGGVRLDLNKEILDKIHKKIDEFEEDVKNIIEV 183

Query: 198 VTNNRIFKQRTVDIGIVSVDEALSWGFSGPVLRGSG---AAWDLRRAQPYECYSELDFDI 254
                +   R+  IG +   E +    +GPV R SG   + W +R    +E Y  L+F  
Sbjct: 184 FETGPLIGMRSKHIGKIGYKEIMKTRAAGPVARASGIPESDWRIR----HETYKALNFKP 239

Query: 255 PVGKHGDCYDRYLVRMEEMRQSTYIMKQCVERLLKETGPVHTQDHKVAPPKRAEMKRSME 314
                GD Y R +VR +E+  S  ++++ +E   + +G V           +AE++ +  
Sbjct: 240 DWRNEGDNYARMMVRHDEVLTSVELIRRALEHYAESSGIVR---------NKAEIRAT-- 288

Query: 315 ALIHHFKLYTEGFHVPEGDVYAAVEAPKGE--FGVYLVSDGTNKPYRCKIRAPGFAHLQA 372
                           EG+ Y   EA +GE  + + +   G  K  R  IR P   +L+A
Sbjct: 289 ----------------EGEWYN--EAHRGEVYYKIAITDGGLIK--RIIIRTPTVMNLEA 328

Query: 373 MDFLNRG-HMLADVSAVLGSLD 393
             ++ +    +AD  A   S+D
Sbjct: 329 YKYMIKDCPTIADAVATYTSID 350