Pairwise Alignments

Query, 476 a.a., NADH-quinone oxidoreductase subunit N from Xanthobacter sp. DMC5

Subject, 1265 a.a., NADH dehydrogenase (quinone) (NCBI) from Rhodospirillum rubrum S1H

 Score =  144 bits (362), Expect = 2e-38
 Identities = 127/483 (26%), Positives = 226/483 (46%), Gaps = 49/483 (10%)

Query: 13  PELVLAVSAIVLILIGAFRGEGSANLVTGLAIAVLAAAGVLVLLQPGTEVSAFNGSLVID 72
           P L+  V    L L G F  +  A  V  +A+A    A V   L+ G            D
Sbjct: 232 PVLLPYVGGFALFLFGRFSAQARA--VGAIALATATLALVAARLESG------------D 277

Query: 73  PFGRFMKVLVSIGALVSLIMSVDWQAREKQAK--FEYAVLVVIATLGMFMLVSAGDLIAL 130
             G F  +  +IG  V+ + SV +          F +  L++ + +G+      G+    
Sbjct: 278 LGGLFALIFAAIGLAVT-VYSVGYMKHGHGVNRYFFFLFLMIGSLIGVATTNHLGNF--- 333

Query: 131 YLGLELMSLSLYVVAAINRDSVRSTEAGLKYFVLGALSSGMLLYGASLIYGFTGSVNFLQ 190
           YL  ELM+   Y++  I+  + ++ +AG+KYF++ A  + ++ +G  +++   G+    +
Sbjct: 334 YLFWELMTWMSYLLV-IHEQTAKALKAGMKYFLICASGAYVMHFGILVLHAQLGTFEISE 392

Query: 191 IAAV--AKEPSIGLIFGLVFLVAGLCFKVSAVPFHMWTPDVYEGAPTPVTAFFASAPKVA 248
           IA       P++  +    FL+ G   K    P + W P+ +  AP+ ++   +     A
Sbjct: 393 IAPCIGTLSPALAGVVLATFLI-GFMAKAGLFPLYSWLPEAHPVAPSSISGPMSGILTKA 451

Query: 249 GMAIFVRVLIEAFPHVSHQWQQIVAFVSLA----------SMVLGAFAAIGQRNIKRLLA 298
           G+   V++L   F   +     + A +SL           +++LG   A  Q +IKRLLA
Sbjct: 452 GILGMVKLLFGIFGVGALGQFGLFAGLSLPGAVLVALGGITLLLGEVQAYRQTDIKRLLA 511

Query: 299 YSSIGHMGFALVGLAAGTAEGVRGVLVYMAIYLMMTLGTFACV--LTMRRKGQAVETVDD 356
           YS++  +G   + L  GT+  + G L ++  + +M    F  V  L +R  G+++   DD
Sbjct: 512 YSTLAQIGEITMVLGVGTSLALAGGLFHVTNHAVMKTMLFFAVGALILRSAGRSL---DD 568

Query: 357 LAGLARRNPLMALMLGALMFSLAGIPPLAGFLAKYYVFVAAIQAGLYGLSVVGVLASVVG 416
           L GL +  P   L LG  + ++ G+PP  GF++K+ +  A ++AG  G++ V ++ SV+G
Sbjct: 569 LKGLGKVMPFTGLCLGIGLLAIMGVPPFGGFVSKFLMIYACVEAGQVGVAAVILVGSVIG 628

Query: 417 AFYYLRIVKIMYFDEPVDAFDPMPTELKAVLAVSGL--FTIFYFVYP-------APLIEA 467
           A YY R+++ ++F EP      +   L   +A+  L    +F  VYP        P++E 
Sbjct: 629 ALYYARVLRAVFF-EPYTGPKVVEAPLTMRIALGALAGVVVFTGVYPDAALSVVMPVVET 687

Query: 468 ASA 470
            SA
Sbjct: 688 LSA 690



 Score =  129 bits (324), Expect = 6e-34
 Identities = 103/428 (24%), Positives = 201/428 (46%), Gaps = 38/428 (8%)

Query: 5    LPPLGAV--LPELVLAVSAIVLILIGAFRGEGSANLVTGLAIAVLAAAGVLVLLQPGTEV 62
            LPPL     L  L+  V A+V+ ++G    + S  +   L++AV+A A   +L+Q G   
Sbjct: 699  LPPLRMEWSLAALIAVVGAVVVYILG----KRSTVVAGSLSVAVMALALAGILIQSGR-- 752

Query: 63   SAFNGSLVIDPFGRFMKVLVSIGALVSLIMSVDWQAR-EKQAKFEYAVLVVIATLGMFML 121
                     D    +   L+ +   ++L+ S+ + A    Q +F +  +++I   G+  +
Sbjct: 753  --------YDLLSFWFAALIVVVGAINLLYSIGYMAHGHAQNRFFFFFVMMIG--GLLGV 802

Query: 122  VSAGDLIALYLGLELMSLSLYVVAAINRDSVRSTEAGLKYFVLGALSSGMLLYGASLIYG 181
             ++ DL   +   E+MS     +  I+ ++  S + G KYF+   + +  L  G +++  
Sbjct: 803  TASDDLFNFFAFWEVMSSWTLYLVIIHEETKDSLDEGTKYFIFNFVGASFLFLGVAILAA 862

Query: 182  FTGSVNFLQIAAVAKEPSIG-LIFGLVFLVAGLCFKVSAVPFHMWTPDVYEGAPTPVTAF 240
              G+     +   A    +G L      ++AGL  K + +P  +        APTPV+ +
Sbjct: 863  KAGTFEMALLPQAALSMPVGWLAVSAGLILAGLLMKAAQLPLRIDYQMHPAPAPTPVSGY 922

Query: 241  FASAPKVAGMAIFVRVLIE-----AFPHVSH--QWQQ----IVAFVSLASMVLGAFAAIG 289
             ++     G    +++++          ++    W      +V  ++  +++     A+ 
Sbjct: 923  ISAVLLKVGPYGVLKIMVALGAGGGLARIAGLGAWMPDPLVVVQVIAALTVLYAGAMAVV 982

Query: 290  QRNIKRLLAYSSIGHMGFALVGLAAGTAEGVRGVLVYMAIYLMMTLGTF---ACVLTMRR 346
            Q  +KRLL YS++  +G+ L+GL+ G+A GV G L++   ++M+    F    C+L    
Sbjct: 983  QNGVKRLLIYSTVSQLGYVLLGLSLGSALGVAGGLMHFVNHMMLKDILFLAAGCILAQAH 1042

Query: 347  KGQAVETVDDLAGLARRNPLMALMLGALMFSLAGIPPLAGFLAKYYVFVAAIQAGLYGLS 406
                V ++DDL GL R+ P+   +      SL+GIPP  GF +K+ ++  A Q G Y L+
Sbjct: 1043 ----VHSLDDLGGLGRKMPITFGLFLFAGLSLSGIPPFNGFASKWLIYQGAFQGGHYLLA 1098

Query: 407  VVGVLASV 414
            +  +++S+
Sbjct: 1099 MAALMSSL 1106



 Score =  103 bits (258), Expect = 3e-26
 Identities = 67/211 (31%), Positives = 112/211 (53%), Gaps = 15/211 (7%)

Query: 272 VAFVSLASMVLGAFAAIGQ-RNIKRLLAYSSIGHMGFALVGLAAGTAEGVRGVLVYMAIY 330
           +A+   A M++G   A+   R++ R+L YS+I  +G+ L+GL  GTA G  G ++++   
Sbjct: 7   LAWAGAALMLIGEGLALRNVRDLARMLTYSTIAEIGYVLMGLGIGTAAGETGAVMHLGYQ 66

Query: 331 -LMMTLGTFACVLTMRRKGQAVETVDDLAGLARRNPLMALMLGALMFSLAGIPPLAGFLA 389
            +M  L   A    +RR G +   +D L G   R P ++LM G  +FS+ G+ P  G  +
Sbjct: 67  AIMRALVVVAAWHLIRRSGSS--KLDALVGSVERMPFVSLMFGFGLFSVMGLSPFKGSFS 124

Query: 390 KYYVFVAAIQAGLYGLSVVGVLASVVGAFYYLRIVKIMYF---------DEPVDAFDPMP 440
           K+ +  AAI+ G +GL+ VG +AS++ AFYY+  ++ + F         D+P+  F    
Sbjct: 125 KFVILYAAIENGYWGLAAVGTVASIIAAFYYIHTIQQVCFQRQSHGILGDKPIPFFQIPV 184

Query: 441 TELKAVLAVSGLFTIFYFVYPAPLIEAASAA 471
            +L  V  V  L T+   + P P +  A+ A
Sbjct: 185 GQLPIV--VLALVTVVMSLDPDPFLMLAANA 213