Pairwise Alignments

Query, 476 a.a., NADH-quinone oxidoreductase subunit N from Xanthobacter sp. DMC5

Subject, 514 a.a., NADH dehydrogenase I, M subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  113 bits (283), Expect = 1e-29
 Identities = 116/484 (23%), Positives = 212/484 (43%), Gaps = 47/484 (9%)

Query: 16  VLAVSAIVLILIGAFRGEGSANLVTGL---AIAVLAAAGVLVLLQPGTEVSAFNGSLVID 72
           ++++SA +L+    + G   +   TGL    +   A+A       P       +  L +D
Sbjct: 33  LISMSASLLLSCAIWLGSDFSLATTGLDSAGVTGAASAWAAEWRLPWIPRFGISLHLAVD 92

Query: 73  PFGRFMKVLVSIGALVSLIMSVDWQAREKQAKFEYAVLVVI--ATLGMFMLVSAGDLIAL 130
                M +L     +++++ S  W+   ++  F +  L+ I    LG+FM +   DL   
Sbjct: 93  GLSLLMVILTCFIGVLAILCS--WKEIVQRIGFFHLNLLWILGGVLGVFMAL---DLFLF 147

Query: 131 YLGLELMSLSLYVVAAINRDSVRSTE----AGLKYFVLGALSSGMLLYG----------A 176
           +   E+M + +Y + A+   SV   +    A  K+F+   +S  ++L            A
Sbjct: 148 FFFWEMMLVPMYFLIALWGHSVTDGKSRINAATKFFIYTQVSGLIMLVAIIGLVLTHQHA 207

Query: 177 SLIYGFTGSVNFLQIAAVAKEPSIGLIFGLVFLVAGLCFKVSAVPFHMWTPDVYEGAPTP 236
           + +Y F    N+L +       S+  +  L F +A    K+  VP H W PD +  APT 
Sbjct: 208 TGVYTF----NYLDLLNTPMSNSVEWLLMLGFFIA-FAVKMPLVPLHGWLPDAHSQAPTA 262

Query: 237 VTAFFASAPKVAGMAIFVRVLIEAFPHVSHQWQQIVAFVSLASMVLGAFAAIGQRNIKRL 296
            +   A           +R  +  FP  S ++      + L  ++ GA  A GQ +IKRL
Sbjct: 263 GSVDLAGILLKTAAYGLLRFALPLFPEASAEFAPYAMVLGLIGIIYGAIVAFGQTDIKRL 322

Query: 297 LAYSSIGHMGFALVGLAAGTAEGVRGVLVYMAIYLMMTLGTFACV--LTMRRKGQAVETV 354
           +AY+SI HMGF ++ + +G+   ++G +V M  + +   G F     L  R   + +  +
Sbjct: 323 VAYTSISHMGFVMIAIYSGSEVALQGAVVQMIAHGLSAAGLFILCGQLYERLHTRDLRQM 382

Query: 355 DDLAGLARRNPLMALMLGALMFSLA--GIPPLAGFLAKYYVFVAAIQAGLYGLSVVGVLA 412
             L G  R  P +      L FS+A  G+P    F+ ++ + V + Q     ++ V    
Sbjct: 383 GGLWGRLRYLPGV-----MLFFSVASLGMPGTGNFVGEFLILVGSFQVAPV-ITAVATFG 436

Query: 413 SVVGAFYYLRIVKIMYF-----DEPVDAFDPMPTELKAVLAVSGLFTIFYFVYPAPLIEA 467
            V+ + Y L +++   F     D  +   D    EL  ++ ++GL  +   +YP P+I+ 
Sbjct: 437 LVLASVYSLIMLQRACFGPAKDDSVLKGLD--RRELTMMMVIAGLL-VLLGLYPQPVIDT 493

Query: 468 ASAA 471
           AS++
Sbjct: 494 ASSS 497