Pairwise Alignments

Query, 1256 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 1061 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

 Score =  436 bits (1120), Expect = e-126
 Identities = 240/560 (42%), Positives = 334/560 (59%), Gaps = 5/560 (0%)

Query: 674  DITSSKQTERHLRLAAAVFANSHDGLVVTNLKSEVSAVNPAFSRITGYAEEEILGQNMRL 733
            DIT  K +E  LR  +     S   +++T+ +  +  VNP F + TGY   E++G N R+
Sbjct: 495  DITERKASEAALRKLSRAVEQSPASVIITDARGTIEYVNPQFEKSTGYRSWEVIGANPRI 554

Query: 734  LHSGRHDREFYRSLWSELTTAGIWQGEIWNRRKNGEIFLQQLNISTVYDDSGAAQNFVGA 793
            L SG      Y  +W  L     W+GE+ NRRK+G ++ +  ++S V D  G   + +  
Sbjct: 555  LKSGHIAEATYAEMWKTLNEGREWRGELHNRRKDGTLYWEYASLSPVKDRRGRTTHLLAV 614

Query: 794  FQDITQAKHSEFELDRIAHYDPLTDLPNRTLLASLLDLAV---SRPGSRCAVLFVDLDRF 850
             +DIT  K +E  L R A++D LTDLPNR+L  S L  A+       S   VLF+DLD F
Sbjct: 615  KEDITARKETENRLIRQANFDELTDLPNRSLCYSRLKEAIVEAEATASIVGVLFIDLDHF 674

Query: 851  KTVNDSLGHMAGDAVLQMAAQRIQDELEAGATLGRHGGDEFVIILEGISGPEDAATLANH 910
            K VNDSLGH  GD +L   AQR+++    G TL R GGDEF+++L  ++G E    +A  
Sbjct: 675  KNVNDSLGHAVGDKLLTAVAQRLREVARPGDTLSRQGGDEFLMLLPDLNGSEAGHGVAQA 734

Query: 911  VIQQMGRPFSMPGGGEIYLGASVGISLFPEDADTPASLLQHADSALAEAKSHGRGGYAFY 970
            ++  +  PFS+ G  EIY+ AS+GI+ FP D  + A LL++ADSA+  AK  GR    F+
Sbjct: 735  ILTALAPPFSIDGR-EIYMAASIGITFFPRDGRSAAELLRNADSAMYTAKESGRNAICFF 793

Query: 971  TQALTRGARVRMEMEADLRRALARDEFILNFQPVVNLATGRITGTEALVRWQSPTHGLVT 1030
            +  +   A  R+ +E  LR+ALA +E  + +QP+V  +  R  G EAL+RW SPT G V+
Sbjct: 794  SPEMEIRAAQRLAIEGALRQALAHEELRVAYQPLVRTSDARPIGAEALLRWTSPTLGEVS 853

Query: 1031 PNRFIPLAEETGLIEPLGNWVMEAACRQMAEWLDKGADLDFIAVNLSPRQFQRGALCEFV 1090
            P  FI +AEETGLI P+G WV++ A  + A    +G     IAVN+S RQF+ G L   V
Sbjct: 854  PTEFIKVAEETGLIVPIGAWVLDQAVAEAARLRAEGYGAFQIAVNVSVRQFRGGDLAGLV 913

Query: 1091 DDVLRRTGLPAHKLEVEITESLLFDARAAAERKLRQLKDTGVRIALDDFGTGYSSLAYLK 1150
             D L+R   PA  LE+E+TESLL D   A    L+ L   GVR++LDDFGTGYS+L+YLK
Sbjct: 914  SDTLKRHDFPAAGLELELTESLLLDVTPAITTTLQSLSALGVRLSLDDFGTGYSALSYLK 973

Query: 1151 RFPISKLKIDRSFVRDLPRAADA-EIATAIISIARALGFSVVAEGIEDPRQHDFLKARGC 1209
             FP   LK+DRSF+RD+  A D+  +A AII++AR LG + + EG+E   Q  F +A  C
Sbjct: 974  TFPFDILKVDRSFIRDISSAPDSGALARAIIAMARGLGLATIVEGVETEEQCAFARAEDC 1033

Query: 1210 DFGQGHLFSRAVTGERLLRL 1229
            D  QG LF +A+T   L R+
Sbjct: 1034 DIMQGFLFGKAMTPADLRRM 1053



 Score = 45.8 bits (107), Expect = 2e-08
 Identities = 151/643 (23%), Positives = 229/643 (35%), Gaps = 132/643 (20%)

Query: 121 TVLVYQASVQSALSETRKLLGTLAEVQVRNLAQERQRLETGALALGSSRFLADDVAGWHG 180
           T+L ++A+ +S L   R + G L              L  G +A   S+ LA        
Sbjct: 40  TLLAWEAARESRLDLQRIIQGAL--------------LADGRIASLLSQALATP------ 79

Query: 181 EPSSERRERLRLLLGE-------SARAFGFTGAELWANNGAFIMASGAEPGRPDMAEMVR 233
              ++RR  LR  L +       +  A G T  ++   +GA        P R +  E + 
Sbjct: 80  ---ADRRAPLRTALADRFAPSRPALLAHGITMTQVLLADGATFFRLN-NPQRSNAVEPIP 135

Query: 234 QVAATGQMAEAPPPRD-STRAGGFAFLVNVPVRDAEHDPCCVLFLQSAVRPEAHP-MLSA 291
           + A    +A A P     T +   A  +  PV    HD   V  L++AV     P +L  
Sbjct: 136 RPALREVLASARPVAAVETTSRATALRLISPVF---HDARLVGVLETAVPLAEMPALLDH 192

Query: 292 VFRTARSAEALLVGPDPRGGVRVTSAVSRDQAAPLPRTFVADPYP----FAAASDRPGQS 347
           + +T R +   L+GP P G      +  R   APLP    A P P      AA    GQ 
Sbjct: 193 LDKTRRHS---LLGPLPAG-----ESGGRLALAPLPPGAGAAPDPETARLVAALGDLGQP 244

Query: 348 GAGIDPSGRAVLA-----VRTPIP-----GDQSSLVLKVDRDEILGGARTSAFFSAALAC 397
            A   P  R++       V T +P     G+    ++    +  L   R S   SA +  
Sbjct: 245 LADGHPFARSLAGADADRVITIVPISDYSGESHGYLMANAVEPALETIRRSLIISATVTA 304

Query: 398 ALLLLAVAVGRGLLQKSRMRDAARELSAARAVSEAEARFRAAFDQAATGILHLDLDGTIL 457
            LLL A+ +             A+ +++ RA+       RA  D    G+  LD +G I 
Sbjct: 305 FLLLAALLL------------LAQLVNSRRALLREREDMRAITDTMGEGLYILDNEGLIA 352

Query: 458 RANDKACRMLGRPASALTGERLWQL----------------------------RSPDHAA 489
             N  A  MLG     L G +   L                             S D A 
Sbjct: 353 FVNRSAETMLGYSREDLLGAKAHSLFHSHDGDGRPQDADACAILRAMRERRHFTSSDEAF 412

Query: 490 AGADVIRPLLDGRIAEIETEESLVH-------PDGSAVWLAFTFSL-----------VRN 531
             ++  R  ++ R A +  ++ L+        P G    LA                +  
Sbjct: 413 IRSNGTRFPVEVRCAPLTADDPLLKALAHQAPPGGPGGRLAARLRAAMGNRPRLSVALSR 472

Query: 532 ADGAADHLLLVAQ---------DISARRAAEAALRESEERFGLAVKGSDQGVWDLNVRTG 582
             G AD LLL            DI+ R+A+EAALR    +   AV+ S   V   + R  
Sbjct: 473 LFGHADALLLPTNPRASVITFVDITERKASEAALR----KLSRAVEQSPASVIITDARGT 528

Query: 583 SLYLSQRAREMLGVGPDEAVDIRRPWHELLHPDDRRKVAPAWKAFLSGGVPTLELDIRLR 642
             Y++ +  +  G    E +       +  H  +    A  WK    G     EL    R
Sbjct: 529 IEYVNPQFEKSTGYRSWEVIGANPRILKSGHIAEAT-YAEMWKTLNEGREWRGEL--HNR 585

Query: 643 RPDGSYHDFRWNGLAARDAAGTISRAVGLLADITSSKQTERHL 685
           R DG+ +    +    +D  G  +  + +  DIT+ K+TE  L
Sbjct: 586 RKDGTLYWEYASLSPVKDRRGRTTHLLAVKEDITARKETENRL 628



 Score = 27.7 bits (60), Expect = 0.006
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 656 LAARDAAGTISRAVGLLADITSSKQTE-RHLRLAAAVFANSHDGLVVTNLKSEVSAVNPA 714
           ++A   A  +  A+ LLA + +S++   R      A+     +GL + + +  ++ VN +
Sbjct: 298 ISATVTAFLLLAALLLLAQLVNSRRALLREREDMRAITDTMGEGLYILDNEGLIAFVNRS 357

Query: 715 FSRITGYAEEEILGQNMR-LLHSGRHD 740
              + GY+ E++LG     L HS  HD
Sbjct: 358 AETMLGYSREDLLGAKAHSLFHS--HD 382