Pairwise Alignments

Query, 281 a.a., putative D,D-dipeptide transport system permease protein DdpC from Xanthobacter sp. DMC5

Subject, 296 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  228 bits (581), Expect = 1e-64
 Identities = 123/274 (44%), Positives = 161/274 (58%), Gaps = 1/274 (0%)

Query: 5   LRHAGWVLRGNPVTACAAAGAVVLVAIAVLAPWITPYDPIASNVPAALQPPSAAHWAGTD 64
           L   G  L GN +     A  + L  +AV AP + PYDP+  ++   L+PPSAAHW GTD
Sbjct: 23  LARGGVALLGNRLVCGGLAVVIALGVVAVFAPALAPYDPLVQDLSQRLRPPSAAHWLGTD 82

Query: 65  QLGRDIFSRLIAATRLDLGIAVSAVLLSFVAGATIGALCGYAGGRVDRSVGRLVDVLMAF 124
            LGRDIFSR++  T + L I   A L        IG + G+ GG VD  + R  DV ++F
Sbjct: 83  HLGRDIFSRVLCGTPITLSIVTIAALTVLPVSLIIGMVAGFFGGIVDAVLMRTTDVFLSF 142

Query: 125 PLFVLAMALVAALGNRVENIVIATALINLPFYIRFARAEVNVRRHAGWVEAARAGGESHA 184
           PL VLA+AL AALG  + N VIA AL   P   R  RAE    + A +V A R  G S  
Sbjct: 143 PLLVLALALAAALGPGLVNAVIAIALTAWPPLARLVRAETRRLKQADFVAATRLQGASAL 202

Query: 185 TIVLAYLLPNILPAMAVQISLNLGWAILNAAGLSFLGLGVQAPTPEWGIMVAEGARFIGN 244
            ++   +LP +LPA   ++SL+L   IL AA L FLGLG Q P+PEWG MVA G  F+ +
Sbjct: 203 RLLSFDILPLVLPAALTRLSLDLAGMILIAASLGFLGLGAQPPSPEWGAMVAAGRTFLMD 262

Query: 245 GQWWLVAFPGLALMLAVLCFNLLGDGLRDILDPR 278
            QWW+   PG+A+ +    FNLLGDG+ ++LDP+
Sbjct: 263 -QWWVATLPGVAIFIVSFAFNLLGDGVSEVLDPK 295