Pairwise Alignments

Query, 281 a.a., putative D,D-dipeptide transport system permease protein DdpC from Xanthobacter sp. DMC5

Subject, 300 a.a., oligopeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  200 bits (509), Expect = 3e-56
 Identities = 105/250 (42%), Positives = 147/250 (58%), Gaps = 1/250 (0%)

Query: 31  IAVLAPWITPYDPIASNVPAALQPPSAAHWAGTDQLGRDIFSRLIAATRLDLGIAVSAVL 90
           +A+LAPWI PYDP A ++   L  PSA H  GTD LGRD+ SRL+   R+ L +   +V 
Sbjct: 51  LALLAPWIAPYDPTALHLDTILSGPSATHLLGTDALGRDVLSRLLYGARVSLWVGFVSVG 110

Query: 91  LSFVAGATIGALCGYAGGRVDRSVGRLVDVLMAFPLFVLAMALVAALGNRVENIVIATAL 150
           ++   G  +G + GY GG +D    RLVD+++ FP F L +A++A L   + NI+    L
Sbjct: 111 IAVAIGLAVGLVAGYFGGIIDELAMRLVDIMLCFPSFFLILAVIAFLEPSLGNIMAVIGL 170

Query: 151 INLPFYIRFARAEVNVRRHAGWVEAARAGGESHATIVLAYLLPNILPAMAVQISLNLGWA 210
            +     R  RAE    R   +V AAR  G     I+L ++LPN +  + V  +L +  A
Sbjct: 171 TSWMGVARLVRAETLSLREREFVAAARLAGAGRTRIILTHILPNAMAPVLVSATLGVAGA 230

Query: 211 ILNAAGLSFLGLGVQAPTPEWGIMVAEGARFIGNGQWWLVAFPGLALMLAVLCFNLLGDG 270
           IL  + LSFLGLGVQ P P WG M+ EG   +     W+  FPGLA+++ VL +NLLG+ 
Sbjct: 231 ILTESALSFLGLGVQPPDPSWGNMLLEGKDVLEIAP-WMSLFPGLAILVTVLGYNLLGES 289

Query: 271 LRDILDPRMR 280
           LRD LDPR++
Sbjct: 290 LRDFLDPRLK 299