Pairwise Alignments

Query, 454 a.a., Ribosomal RNA small subunit methyltransferase B from Xanthobacter sp. DMC5

Subject, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

 Score = 90.1 bits (222), Expect = 1e-22
 Identities = 82/293 (27%), Positives = 131/293 (44%), Gaps = 16/293 (5%)

Query: 167 MAAMLTPAPLDLRVNPIKADRVQMLSALRALGLPAELSPL----SPYGIRVNERPA-LNR 221
           +AA   P    +RVN +K    +     RA     +L+P+    + + I  +E    L  
Sbjct: 59  IAACQRPLRKSIRVNTLKISVAEFCQ--RAAEKEWQLTPVPWCENGFWIDADESLVPLGN 116

Query: 222 LAMLKTGELEIQDEGSQLV--AVVVDAKPGERVVDFCAGAGGKTLAIAAQMKNKGHVIAC 279
            A    G   IQ+  S +   A+ +     + V+D  A  G KT  +AA M N+G ++A 
Sbjct: 117 TAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVAN 176

Query: 280 DVLENRLKRAAERFRRAGLHNIETRPL-ASETDRWVKRHKGGFDRVLVDAPCSGTGTWRR 338
           +   +R+K       R G+ N             W+      FD VL+DAPCSG GT R+
Sbjct: 177 EFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLPER---FDAVLIDAPCSGEGTIRK 233

Query: 339 NPDARWRVLGPGLDALLPLQARILASAARLVKPGGRLVYATCSLLAEENEEQVAAFLAAH 398
           +PDA        + ++   Q  ++ SA + +K GG LVY+TC+L  EEN++        +
Sbjct: 234 DPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVYSTCTLSREENQQVCWHLKQTY 293

Query: 399 -PAFRVVPLSEVAPQIT-GSAHPDYLALTPARHDTDGFFAAVLEREAA-PIPE 448
             A     L  +    +       +L + P  +D +GFF A + + A+ P PE
Sbjct: 294 GDAVSFESLGNLFEHASLALTEEGFLHIFPQMYDCEGFFVAKIRKLASVPTPE 346