Pairwise Alignments

Query, 454 a.a., Ribosomal RNA small subunit methyltransferase B from Xanthobacter sp. DMC5

Subject, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

 Score =  137 bits (345), Expect = 7e-37
 Identities = 97/299 (32%), Positives = 141/299 (47%), Gaps = 12/299 (4%)

Query: 144 RYECPEWGAEGLHRRFGEDFPQEMAAMLTPAPLDLRVNPIKADRVQMLSALRALGLPAEL 203
           RY  P W  + L   + E + Q + A  + AP+ LRVN     R +  + L   G+    
Sbjct: 139 RYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVTTP 198

Query: 204 SPLSPYGIRVNERPALNRLAMLKTGELEIQDEGSQLVAVVVDAKPGERVVDFCAGAGGKT 263
              +   + +     +++L     G + +QD  +QL    +  + GE ++D CA  GGKT
Sbjct: 199 HAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKT 258

Query: 264 LAIAAQMKNKGHVIACDVLENRLKRAAERFRRAGLHNIETRPLASETDRWVKRHKGGFDR 323
             I  +   +  V+A D  E RLKR  E  +R  L        A    +W +  +  FDR
Sbjct: 259 AHILERTP-ESQVVAIDCDETRLKRVRENLQRLELTAQVICGDARYPQQWWQGEQ--FDR 315

Query: 324 VLVDAPCSGTGTWRRNPDARWRVLGPGLDALLPLQARILASAARLVKPGGRLVYATCSLL 383
           +L+DAPCS TG  RR+PD +W      + AL  LQ  IL +  + +KPGG LVYATCS+ 
Sbjct: 316 ILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSIT 375

Query: 384 AEENEEQVAAFLAAHPAFRVVPLSEVAPQITGSAHPDYLALTPARHDTDGFFAAVLERE 442
            +EN  QV AFL   P  R+V      P            + P     DGF+ AVL ++
Sbjct: 376 PQENRLQVKAFLERTPDARLVGSEPAQPG---------RQILPGEEAMDGFYYAVLSKQ 425