Pairwise Alignments

Query, 832 a.a., Ribonuclease R from Xanthobacter sp. DMC5

Subject, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

 Score =  363 bits (931), Expect = e-104
 Identities = 258/788 (32%), Positives = 403/788 (51%), Gaps = 54/788 (6%)

Query: 61  MPTKAQVLAFIATQNGEVGKREIARAFGLSAAQKVE-LKQLLRDLSAEGTVSRERRRLHV 119
           +P++  +L F+   N  + + ++  A  L   ++ E L++ LR +  +G +   RR+ + 
Sbjct: 22  IPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLRRRLRAMERDGQLVFTRRQCY- 80

Query: 120 PGALPA--EVLADIVSRDGDGELVAVPVEWDSEAQGEA--PHILVQVPRRASGPAPGLSD 175
             ALP   E++   V    DG     P E     +G+   PH  ++             D
Sbjct: 81  --ALPEKLEMVKGYVIGHKDGHGWVRP-EGSLNKEGDILLPHHQMRTLIHG--------D 129

Query: 176 RVLLRIVEGSIEHAVPHVGRVIKVLEKARKQTMGIFRAAPQGGGGRIIPIDKKQLGRELQ 235
            VL++      +      GR++++LE+   Q +G F    + G   ++P D  ++  ++ 
Sbjct: 130 FVLVQ--PSGTDKRGRKEGRLVRILEERNGQIVGRFFF--EYGYSYVVP-DDSRIHHDIL 184

Query: 236 VPPGAEHEAEDGDLVTVELMRQ--RVFGLPTARVKEKLGSLKSEKAVSLIAIHAHGIPNA 293
           +P      A  G++V +E+  +  R  G+   +V E LG   +    + IAI  H IP+ 
Sbjct: 185 IPNDLRAGARMGNVVVIEITDRGTRNRGM-MGKVVEVLGENMAPGMETQIAIRTHQIPHE 243

Query: 294 FPDVVLKEA----EAAKQITVRGREDWRDLPLVTIDPPDAKDHDDAVHAAADEDGGFIVT 349
           +P  V ++     E   +   +GR D R LPLVTID  DA+D DDAV+  A + GG+ + 
Sbjct: 244 WPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLW 303

Query: 350 VAIADVSAYVRPGTALDREALIRGNSVYFPDRVVPMLPERISNDLCSLRPDEDRPALAVR 409
           VAIADVS YVRP TALD+EA+ RGNSVYFP +VVPMLPE +SN LCSL P  DR  +   
Sbjct: 304 VAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCE 363

Query: 410 LVIGGDGRKRSHSFHRILMRSAGKLAYAQAQNAIEGRTDDITDPLVEGV--LKPLYAAYA 467
           + +   G+   +  +  +M S  +L Y +    +EG  +++ +     V  L+ L+  Y 
Sbjct: 364 MTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEG-DEELRERYKALVPHLEELHKMYQ 422

Query: 468 CVKKARDARQPLDLDLPERKIILKPDGTVDRVVVPERLDAHRLIEEFMILANVAAAETLE 527
            +K ARD R  ++ +  E K I      ++ +    R DAH+LIEE MILAN+A+A  +E
Sbjct: 423 VLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVE 482

Query: 528 EKKTPLIYRVHDGPTLAKLSALRDFLKTLDIGLPKTDQVRPSHFNRILEEVKDTDAAPLV 587
           + K   +YRVH+ P   +L+  RDFL  L + L    +  P+ +  +++++ +     L+
Sbjct: 483 KAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELI 542

Query: 588 NQVILRSQSQAEYASENYGHFGLNLRRYAHFTSPIRRYADLIVHRGLVRALGVGKDGLPD 647
             ++LRS  QA Y ++N GHFGL L+RYAHFTSPIRRY DL++HR  ++ L   ++G   
Sbjct: 543 QTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRA-IKYLIAKQEGRNQ 601

Query: 648 DA---------TVESLGEVAAAISVTERRAMAAERETVDRLIAHHLADQIGATFNGRITG 698
           D          + + +       S+TERRA  A RE  D L   ++ D +G    G +  
Sbjct: 602 DRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVAN 661

Query: 699 ATKAGLFVALDITGADGFIPASTLGQDYYRYDEVRQALVGDRTGEMHRIGDRVEVKLVEA 758
            T  G FV L     DG +  STL  DYY YD + Q LVG+  G ++R+GD V+VK++  
Sbjct: 662 VTSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAV 721

Query: 759 APVAGALRFELLSEGSYVKGPRGGGPQRRGAPSGFAGRPGKSLPGRAKPGKSGSGKSGSG 818
                 + FEL+     ++G   G   ++ A    A   GK         K  + K   G
Sbjct: 722 NLDDRQIDFELVETSRKLRGQ--GKTAKKRADEARAKAQGK---------KEAATKGACG 770

Query: 819 KASPGKAK 826
           K SP K++
Sbjct: 771 K-SPTKSE 777