Pairwise Alignments

Query, 183 a.a., Ribosomal RNA small subunit methyltransferase D from Xanthobacter sp. DMC5

Subject, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

 Score = 89.7 bits (221), Expect = 3e-23
 Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 6/152 (3%)

Query: 1   MRIVGGRLKGRALKGPSSSLTRPTSDRLRESLFNMLAHAYGDPCDGARVLDLFAGTGALG 60
           +RI+ G  +GR L    +   RPT+DR++E+LFN LA    +    AR LDLFAG+G LG
Sbjct: 19  VRIISGLWRGRKLPVHDAEGLRPTTDRVKETLFNWLAQEVPN----ARCLDLFAGSGGLG 74

Query: 61  IEALSRGARFALFVEEAAEARGLIRDNVEALGLTGVTKVFRRDATSLGPMGPGEPYGLVF 120
            E  SR A     +E    A   ++ NV++L    + ++   DA +      G+PY +VF
Sbjct: 75  FECASRQANQVTMLELNPLAFQQLKTNVQSLKAENI-ELIHTDALAFLRQS-GKPYDVVF 132

Query: 121 CDPPYGKGLAEQAIAAAVEGGWLTADALLIIE 152
            DPP+ +GL ++      + GWL   A++ IE
Sbjct: 133 IDPPFRQGLLQETTQLLEQNGWLAPQAMIYIE 164