Pairwise Alignments

Query, 336 a.a., Putative amino-acid ABC transporter-binding protein YhdW from Xanthobacter sp. DMC5

Subject, 343 a.a., ABC transporter for D-Alanine, periplasmic substrate-binding component (from data) from Pseudomonas fluorescens FW300-N2E2

 Score =  404 bits (1039), Expect = e-117
 Identities = 199/335 (59%), Positives = 253/335 (75%), Gaps = 4/335 (1%)

Query: 5   LLAAAGLLSLAGAVQA-ATLDDVKARGALNCGVTQGLPGFSSPNDKNEWSGLDVDFCRAI 63
           ++ AA +L ++G  QA ATLD V+ +G + CGV+ GLPGFS P+   +  G+D DFCRA+
Sbjct: 10  VMTAAAVLGVSGFAQAGATLDAVQKKGFVQCGVSDGLPGFSVPDSTGKIVGIDADFCRAV 69

Query: 64  AAGIFNDPTKVKFTPLSAKDRFTALTSGAIDVLSRNTTWTMSRDTTLGFNFAG-VMYYDG 122
           AA +F D TKVKF+ L+AK+RFTAL SG ID+LSRN+T T SRD  +G  F G + YYDG
Sbjct: 70  AAAVFGDATKVKFSQLNAKERFTALQSGEIDMLSRNSTMTSSRDAGMGLKFPGFITYYDG 129

Query: 123 QGFLIRKSVGLKSAKELQEASICVQTGTSNELNVGDYFRANNMKYREVIAFATLDETVKA 182
            GFL    +G+KSAKEL  A+IC+Q GT+ ELNV DYFRAN +KY   I F T DE+ K+
Sbjct: 130 IGFLANNKLGVKSAKELDGATICIQAGTTTELNVSDYFRANGLKYTP-ITFDTSDESAKS 188

Query: 183 YESGRCDVFTSDKSQLAAVRLKLTNPADHVLLPETISKEPLGPLVRHGDDQWFDLVKWTY 242
            ESGRCDV TSDKSQL A R KL +P D+V+LPETISKEPLGP+VR+GDD+W  +V+WT 
Sbjct: 189 LESGRCDVLTSDKSQLFAQRSKLASPKDYVVLPETISKEPLGPVVRNGDDEWLAIVRWTG 248

Query: 243 FALLNSEELGITQKNVDEMVKS-ENPDIKRLLGTDGKYGEGIGLTPDWVVRIIKATGNYG 301
           +ALLN+EE G+T KNV+   KS +NPD+ R+LG DG+YG+ + L  DWVV+I+K  GNYG
Sbjct: 249 YALLNAEEAGVTSKNVEAEAKSTKNPDVARMLGADGEYGKDLKLPKDWVVQIVKQVGNYG 308

Query: 302 EIYDRNVGPATPLGIERGLNNLWTKGGIQYGPPVR 336
           E+++RN+G  TPL I+RGLN LW  GGIQY PPVR
Sbjct: 309 EMFERNLGKGTPLEIDRGLNALWNAGGIQYAPPVR 343