Pairwise Alignments

Query, 816 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Xanthobacter sp. DMC5

Subject, 857 a.a., chaperone protein ClpB from Vibrio cholerae E7946 ATCC 55056

 Score =  299 bits (765), Expect = 5e-85
 Identities = 192/489 (39%), Positives = 281/489 (57%), Gaps = 28/489 (5%)

Query: 4   FSRSLEQSLHRALALANERHHEYATLEHLLLSLVDDQDAAA--VMRACNVDMEKLRRNLI 61
           F+   + ++  A +LA  R H+Y    HL+++L+D   +    ++   NVD+ +LR  L 
Sbjct: 6   FTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLNVDVMQLRSKLG 65

Query: 62  EYVDTELENLVQSGSDDSKPTAGFQRVIQRAVIHVQSSGREEVTGANVLVAIFAERESHA 121
           E +D  L  +   G D    +A     +      V    ++    + + +    E +   
Sbjct: 66  EMLD-RLPKVSGIGGDVQLSSA--LGSLFNLCDKVAQKRQDAYISSEIYLLAAIEDKGPL 122

Query: 122 AYFLQEQDMTRYDAVNYISHGIAKRSGMSESRPVRGADEETETKSGDDKQKKADALDAYC 181
            + L+E  +T       +S  I K         +RG  +  +  + + +Q    AL+ + 
Sbjct: 123 GHLLKEFGLTE----KKVSEAIEK---------IRGGQKVNDPNAEELRQ----ALEKFT 165

Query: 182 INLNKKAHEGKIDPLIGRDSEITRTIQVLCRRQKNNPLFVGDPGVGKTAIAEGLAKRIND 241
           I+L ++A +GK+DP+IGRD EI RTIQVL RR KNNP+ +G+PGVGKTAI EGLA+RI +
Sbjct: 166 IDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIIN 225

Query: 242 GEVPEVLATATVFALDMGALLAGTRYRGDFEERLKQVVKEI-EAYPNAIMFIDEIHTVIG 300
            EVPE L    V +LDMGAL+AG +YRG+FEERLK V+ E+ +   N I+FIDE+HT++G
Sbjct: 226 NEVPEGLRGRRVLSLDMGALVAGAKYRGEFEERLKSVLNELAKEEGNIILFIDELHTMVG 285

Query: 301 AGATSGGAMDASNLLKPALASGSLRCMGSTTYKEYRQYFEKDRALVRRFQKIDVAEPTVP 360
           AG    G+MDA N+LKPALA G L C+G+TT  EYRQY EKD AL RRFQK+ V EPTV 
Sbjct: 286 AG-KGEGSMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVE 344

Query: 361 DAIEILKGLKPYFEDYHKLRYTNDAIKAAVELSARYIHDRKLPDKAIDVIDESGAAQMLL 420
           D I IL+GLK  +E +H +  T+ AI AA  LS RYI DR+LPDKAID+IDE+ ++  + 
Sbjct: 345 DTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRMQ 404

Query: 421 PEAKRKKTIGLKEIEATIATMARIPPKTVSKDDAEVLANLQTTLKRVVYGQNKAIEALSA 480
            ++K +    L ++E  I  + +I  + +S +  E        L   +  + +    L  
Sbjct: 405 IDSKPE---ALDKLERKIIQL-KIEQQALSNEHDEASEKRLAILNEELQEKERDYAELEE 460

Query: 481 SIKLARAGL 489
             K  +A L
Sbjct: 461 VWKAEKAAL 469



 Score =  256 bits (654), Expect = 4e-72
 Identities = 136/344 (39%), Positives = 214/344 (62%), Gaps = 7/344 (2%)

Query: 404 DKAIDVIDESGAAQMLLPEAKRKKTIGLKEIEATIATMARIPPKTVSKDDAEVLANLQTT 463
           +K +D+  ++   +M L   K    +   EI   ++    IP   + + + E L  ++  
Sbjct: 510 EKQLDLAAQAEMQEMTLLRNK----VTDAEIAEVLSKQTGIPVSKMLEAEKEKLLRMEDV 565

Query: 464 LKRVVYGQNKAIEALSASIKLARAGLREPEKPIGCYLFSGPTGVGKTEVAKQLASILGVQ 523
           L + V GQ +A+E ++ +I+ +RAGL +P +PIG +LF GPTGVGKTE+ K LA+ L   
Sbjct: 566 LHKRVIGQKEAVEVVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDS 625

Query: 524 ---LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQNPHCVLLLDEIEKAHPD 580
              ++R DMSE+ME+H+V+RL+GAPPGYVG+++GG LT+ V + P+ V+LLDE+EKAHPD
Sbjct: 626 EDAMVRVDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPD 685

Query: 581 LFNILLQVMDHGKLTDHNGKQIDFRNVILIMTTNAGAADLAKPAYGFTRQKREGDDSEAI 640
           +FNILLQV+D G+LTD  G+ +DFRN ++IMT+N G++ + +       Q  +    + +
Sbjct: 686 VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQENFARLDYQGIKEQVMDVV 745

Query: 641 SRTFAPEFRNRLDAVIPFGHLPPEVITQVVEKFVLQLEAQLADRNVTIELSDEAGTWLVD 700
           S+ F PEF NR+D  + F  L  E I  +    + +L  +LA+R+  +E+ DEA   +  
Sbjct: 746 SKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLARLRQRLAERDYQLEVDDEALDLIAH 805

Query: 701 RGYDEQMGARPMARVIQEFIKTPLADLVLFGALKNGGHVRVVVE 744
            G+D   GARP+ R IQ+ ++ PLA  +L G    G  + + V+
Sbjct: 806 VGFDPVYGARPLKRAIQQNVENPLAKSILAGKFLPGSPILLSVK 849



 Score = 26.2 bits (56), Expect = 0.008
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 219 LFVGDPGVGKTAIAEGLAKRINDGE 243
           LF+G  GVGKT + + LA  + D E
Sbjct: 602 LFLGPTGVGKTELCKTLANFLFDSE 626