Pairwise Alignments

Query, 403 a.a., Coupling protein VirD4, ATPase required for T-DNA transfer from Xanthomonas campestris pv. campestris strain 8004

Subject, 565 a.a., Type IV secretion system protein VirD4 from Xanthomonas campestris pv. campestris strain 8004

 Score =  641 bits (1653), Expect = 0.0
 Identities = 330/375 (88%), Positives = 340/375 (90%)

Query: 28  PTQESNRRHDPGCLCPTSGKHRYHQPRTLNQAATQGGGTSDAQKFWVSQARNAFMAFTLY 87
           P  E  R H    L   S    +     ++ AA      SDAQKFWVSQARNAFMAFTLY
Sbjct: 191 PFAEDGRTHRWNPLSYISPDPAFRVSDLMSVAAMLYPDGSDAQKFWVSQARNAFMAFTLY 250

Query: 88  LFDSLDDQIKREHPKDTWMFPTLGMLYRVSSGDGSDLKGYLKKLSQRDFLGRDAKTAFDN 147
           LFDSLDDQIKR+HPK+TWMFPTLGMLYRVSSGDGSDLKGYLKKLSQR+FLGRDAKTAFDN
Sbjct: 251 LFDSLDDQIKRKHPKETWMFPTLGMLYRVSSGDGSDLKGYLKKLSQREFLGRDAKTAFDN 310

Query: 148 LLSQAEETFASIMGTFKEPLNQFINPILDASTSDNDFLLTDVRKKKMSIYIGIQPNKLAE 207
           LLSQAEETFASIMGTFKEPLNQFINPILDASTSDNDFLLTDVRKKKMSIYIGIQPNKLAE
Sbjct: 311 LLSQAEETFASIMGTFKEPLNQFINPILDASTSDNDFLLTDVRKKKMSIYIGIQPNKLAE 370

Query: 208 SRLLINLLFSQLINLNTKELPQNNPVLEHQCLLLMDEFTSIGRVDIIASAVSYMAGYNIR 267
           SRLLINLLFSQLINLNTKELPQNNP L+HQCLLLMDEFTSIGRVDIIASAVSYMAGYNIR
Sbjct: 371 SRLLINLLFSQLINLNTKELPQNNPALKHQCLLLMDEFTSIGRVDIIASAVSYMAGYNIR 430

Query: 268 LLPIIQSMAQLDATYGKDVSRTIITNHALQIVYAPREQQDANDYSDMLGYTTVRKKNKSQ 327
           LLPIIQSMAQLDATYGKDVSRTIITNHALQIVYAPREQQDANDYSDMLGYTTVRKKNKS 
Sbjct: 431 LLPIIQSMAQLDATYGKDVSRTIITNHALQIVYAPREQQDANDYSDMLGYTTVRKKNKSH 490

Query: 328 TSGKQSSVSYSETEQRRALMLPQELKAMGFDKEVFLYEGIPSPVLCEKIKYYEDAYFTKR 387
           TSGKQSSVSYSETEQRRALMLPQELKAMGFDKEVFLYEGIPSPVLCEKIKYYEDAYFTKR
Sbjct: 491 TSGKQSSVSYSETEQRRALMLPQELKAMGFDKEVFLYEGIPSPVLCEKIKYYEDAYFTKR 550

Query: 388 LLPKAEVKALMSTAA 402
           LLPK +++AL    A
Sbjct: 551 LLPKVKIEALQMALA 565