Pairwise Alignments

Query, 403 a.a., Coupling protein VirD4, ATPase required for T-DNA transfer from Xanthomonas campestris pv. campestris strain 8004

Subject, 557 a.a., hypothetical protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  486 bits (1251), Expect = e-142
 Identities = 254/370 (68%), Positives = 302/370 (81%), Gaps = 5/370 (1%)

Query: 28  PTQESNRRHDPGCLCPTSGKHRYHQPRTLNQAATQGGGTSDAQKFWVSQARNAFMAFTLY 87
           P  E  R H    L   S    +     ++ AA      SD QKFWVSQARNAFMAF+LY
Sbjct: 189 PFAEDRRTHRWNPLTYVSADPAFRVSDLMSIAAMLYPDGSDDQKFWVSQARNAFMAFSLY 248

Query: 88  LFDSLDDQIKREHPKDTWMFPTLGMLYRVSSGDGSDLKGYLKKLSQRDFLGRDAKTAFDN 147
           LF++ D+++    P      PTLG +YR+SSGDG+DLK YLK LS+R FL  +AK+AF N
Sbjct: 249 LFENWDEELSLGFPGGAGA-PTLGGIYRLSSGDGTDLKKYLKSLSERRFLSSNAKSAFAN 307

Query: 148 LLSQAEETFASIMGTFKEPLNQFINPILDASTSDNDFLLTDVRKKKMSIYIGIQPNKLAE 207
           +LSQA+ETFASIMGT KEPLN +INP+LDA+TS +DFLLTD+RKKKM+IYIGIQPNKLAE
Sbjct: 308 MLSQADETFASIMGTLKEPLNAWINPVLDAATSADDFLLTDLRKKKMTIYIGIQPNKLAE 367

Query: 208 SRLLINLLFSQLINLNTKELPQNNPVLEHQCLLLMDEFTSIGRVDIIASAVSYMAGYNIR 267
           SRL+INLLFSQ+INLNT+ELP+ NP L++QCLLLMDEFTSIG+VDII++AV+YMAGYNIR
Sbjct: 368 SRLIINLLFSQIINLNTRELPKANPELKYQCLLLMDEFTSIGKVDIISTAVAYMAGYNIR 427

Query: 268 LLPIIQSMAQLDATYGKDVSRTIITNHALQIVYAPREQQDANDYSDMLGYTTVRKKNKSQ 327
           LLPIIQSMAQLDATYGKD+SRTIITNHALQI+YAPREQQDANDYS+MLGYTT++KKN   
Sbjct: 428 LLPIIQSMAQLDATYGKDLSRTIITNHALQILYAPREQQDANDYSEMLGYTTIKKKN--V 485

Query: 328 TSGKQSSVSYSETEQRRALMLPQELKAMGFDKEVFLYEGIPSPVLCEKIKYYEDAYFTKR 387
           T G+++  ++S +E+RRALMLPQELKAMG +KEVFLYEGIP PV C+KI+YYED YFT R
Sbjct: 486 TRGRET--THSVSEERRALMLPQELKAMGNEKEVFLYEGIPHPVKCDKIRYYEDRYFTVR 543

Query: 388 LLPKAEVKAL 397
           LLPK  V  L
Sbjct: 544 LLPKVGVATL 553