Pairwise Alignments

Query, 403 a.a., Coupling protein VirD4, ATPase required for T-DNA transfer from Xanthomonas campestris pv. campestris strain 8004

Subject, 578 a.a., type IV secretory system conjugative DNA transfer family protein from Paraburkholderia sabiae LMG 24235

 Score =  296 bits (758), Expect = 1e-84
 Identities = 170/376 (45%), Positives = 234/376 (62%), Gaps = 10/376 (2%)

Query: 28  PTQESNRRHDPGCLCPTS-GKHRYHQPRTLNQAATQGGGTSDAQKFWVSQARNAFMAFTL 86
           P  E  R H    L   S G  R      +  A    GG  D   FW  QARN F+   L
Sbjct: 85  PFAEDGRTHRFNPLSAISDGLFRVGDILAIGYALYPPGGHDD---FWKDQARNLFLGIVL 141

Query: 87  YLFDSLDDQIKREHPKDTWMFPTLGMLYRVSSGDGSDLKGYLKK--LSQRDFLGRDAKTA 144
            L +  D +             T+G + R SSG G  +K YL++  +  R  L      A
Sbjct: 142 LLSEWRDARRTGRGESIPDYPVTMGEVLRQSSGHGMPVKAYLQRALVQHRALLSGACVDA 201

Query: 145 FDNLLSQAEETFASIMGTFKEPLNQFINPILDASTSDNDFLLTDVRKKKMSIYIGIQPNK 204
            +  LS  ++  ASI+ TF  PL  + NPI+DA+TS NDF L DVR+++MSIYIGI P+ 
Sbjct: 202 LNRFLSNDDKVLASILATFHAPLTIWANPIVDAATSANDFDLRDVRRRRMSIYIGITPDH 261

Query: 205 LAESRLLINLLFSQLINLNTKELPQNNPVLEHQCLLLMDEFTSIGRVDIIASAVSYMAGY 264
           L+E+ LL+NL+FSQL+NLNTK+LP+ +P L  QCLLL+DE T+IG++ IIA AV+YMAGY
Sbjct: 262 LSEAALLVNLVFSQLVNLNTKQLPETDPTLRFQCLLLLDEMTAIGKIHIIARAVAYMAGY 321

Query: 265 NIRLLPIIQSMAQLDATYGKDVSRTIITNHALQIVYAPREQQDANDYSDMLGYTTVRKKN 324
           N+RLL ++QS+AQL++ YG+  +RT +TNHA+QI+YAPREQ+DANDYS+MLG  T + ++
Sbjct: 322 NLRLLSVVQSIAQLESVYGRADARTFLTNHAMQILYAPREQKDANDYSEMLGTFTDQSRS 381

Query: 325 KSQTS---GKQSSVSYSETEQRRALMLPQELKAMGFDKEVFLYEGIPSPVLCEKIKYYED 381
            S+ +   G +   S S +EQRR L+LPQELK +G DKE+ + E    P+L ++I Y+ D
Sbjct: 382 VSRPNTMFGGRGGSSESMSEQRRPLLLPQELKELGRDKEIIVLEN-TKPILADRICYWRD 440

Query: 382 AYFTKRLLPKAEVKAL 397
             F  R+L    V A+
Sbjct: 441 PVFASRVLIAPSVPAM 456