Pairwise Alignments

Query, 403 a.a., Coupling protein VirD4, ATPase required for T-DNA transfer from Xanthomonas campestris pv. campestris strain 8004

Subject, 665 a.a., conjugal transfer protein TraG from Dickeya dianthicola 67-19

 Score =  109 bits (272), Expect = 3e-28
 Identities = 66/254 (25%), Positives = 141/254 (55%), Gaps = 10/254 (3%)

Query: 143 TAFDNLLSQAEETFASIMGTFKEPLNQFINPILDASTSDNDFLLTDV--RKKKMSIYIGI 200
           +A   +L++++   + ++ T    L  + +P +   TS  D+ + D+   +  +S+Y+ +
Sbjct: 306 SAAREVLNKSDNERSGVLSTAMSFLGLYRDPTVAEVTSRCDWRIADLISAEHPVSLYLVV 365

Query: 201 QPNKLAESRLLINLLFSQLINLNTKELPQNNPVLE-HQCLLLMDEFTSIGRVDIIASAVS 259
            P+ ++ ++ LI L+ +Q+    T+ L  ++ +   H+ LL++DEF ++GR+D   SA++
Sbjct: 366 PPSDISRTKPLIRLILNQIGRRLTESLDGSDGIARRHKLLLMLDEFPALGRLDFFESALA 425

Query: 260 YMAGYNIRLLPIIQSMAQLDATYGKDVSRTIITNHALQIVYAPREQQDANDYSDMLGYTT 319
           +MAGY IR   I QS+ Q+D  YG+  + +I+ N  +++ +A  +++ A   S+ LG  T
Sbjct: 426 FMAGYGIRSFLIAQSLNQIDKAYGQ--NHSILDNCHVRVTFATNDERTAKRISETLGTAT 483

Query: 320 VRKKNKSQTSGKQS----SVSYSETEQRRALMLPQELKAMGFDKEVFLYEGIPSPVLCEK 375
             +  ++    + +     +  S  E  R L+ P E+  +  D+ V +   + +P+  +K
Sbjct: 484 ELRAQRNYAGHRLAPWLGHLMVSRQETARPLLTPGEVMQLPPDESVVMVSSV-APIKAKK 542

Query: 376 IKYYEDAYFTKRLL 389
           ++YY DA F +R++
Sbjct: 543 LRYYTDANFKQRVV 556