Pairwise Alignments

Query, 865 a.a., histidine kinase/response regulator hybrid protein from Xanthomonas campestris pv. campestris strain 8004

Subject, 345 a.a., GAF domain/GGDEF domain protein from Pseudomonas putida KT2440

 Score =  129 bits (325), Expect = 2e-34
 Identities = 80/203 (39%), Positives = 103/203 (50%), Gaps = 9/203 (4%)

Query: 6   PPVPIPANDALRVDAVRRLGVLDTAAEAEFDDLAWLAAHISGSPMALISLLDADRQWFKA 65
           P  P+PA++ALR   +  + ++DT AE   D L  L   ++     LISL+D DRQWFKA
Sbjct: 2   PACPLPADEALRQRTLDDMDLVDTPAEHYLDTLVRLTQELAQVETVLISLIDQDRQWFKA 61

Query: 66  RCGTDLEGTPRSVSFCSYTVMGTDLLEVPDAIADPRFTHNPLVTAAPGIRSYVGVPLIGR 125
           R G ++  T R+VSFC Y ++G D L V DA  D RF  NPLV   P IR Y G PL   
Sbjct: 62  RIGIEVSETKRNVSFCGYAILGEDTLMVSDARCDSRFEDNPLVLNPPYIRFYAGHPLRAS 121

Query: 126 EGYAYGTLCMLSTRPRVLDENQKQALIRLARQAVNQLEAR---------RDRLDAQAQRQ 176
            G A GTLCM   RPR L + Q+     LA      L+ R         R  +D   +R 
Sbjct: 122 NGKAIGTLCMFDPRPRKLSDAQQANFRDLATLTEGYLQLRSLAQVNHALRVEMDRGQRRA 181

Query: 177 TLSLLLEAMPDGVVACGTDGLLR 199
            L  L +    G +A   +  LR
Sbjct: 182 LLDPLTQLWNRGALAAFQNRELR 204



 Score = 70.5 bits (171), Expect = 2e-16
 Identities = 57/160 (35%), Positives = 80/160 (50%), Gaps = 14/160 (8%)

Query: 695 RATRDALTGLPNRHAWSEALHTAVTHAQQQHTAVAVMFLDLDGFKRINDVHGHRAGDAVL 754
           RA  D LT L NR A +   +  +  A+++   +  ++ DLD FK +ND HGH AGD VL
Sbjct: 180 RALLDPLTQLWNRGALAAFQNRELRLAEERGLQLGAVYADLDRFKSVNDEHGHDAGDKVL 239

Query: 755 VAFGRCLQQAVGTRYLVARLAGDEFVVLLDDLHAPERECAAVAERIRNAVAAGTTFGEQW 814
               R L+  +    L+ R  G+EFV LL       +E A +AER+R ++ +        
Sbjct: 240 CECARRLRATLRPDDLLVRQGGEEFVALL--RVKDSQELAQIAERLRQSIGSAPFL---- 293

Query: 815 LPIQP-----SIGVA-WQRGSTADTASLMHAADEAMYAAK 848
           LP  P     SIG A   +G   D A  +  AD  +YAAK
Sbjct: 294 LPGGPRKMTMSIGCALLTQGEQIDDA--IKRADGGLYAAK 331