Pairwise Alignments

Query, 1134 a.a., Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) from Xanthomonas campestris pv. campestris strain 8004

Subject, 1160 a.a., ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease, recombinase subunit from Pseudomonas putida KT2440

 Score =  390 bits (1001), Expect = e-112
 Identities = 350/1163 (30%), Positives = 525/1163 (45%), Gaps = 133/1163 (11%)

Query: 7    PDFRLYPSNALDTLAALLAEELRRPVPEQPVLQPEVVLIPQVAMRRWLQSTLAAEH---- 62
            P F +   N LD L +L+   +RR  P  P L+ E+ L+    + +WL+  LA +     
Sbjct: 9    PGFMIVHGNRLDDLRSLVVSWMRR-YPLAP-LENEIALVQSNGIAQWLKLALAEDPLEDD 66

Query: 63   ----GVAANLEFLTPGEFVARALERNLG----PADDDLDMATTQWRLYQTLQGELGSDAA 114
                G+AA ++   PG F+ +     LG    P    LD A   WRL + L   L     
Sbjct: 67   QGGCGIAAAIDVQLPGSFMWQLYRSVLGRSEIPEVSLLDKAPLTWRLMRLLPA-LIERPH 125

Query: 115  LAPLAGYLAD-GDALKPWALAGELGSVFEKYQAWRRDWLLRWESGADADDP--------- 164
              PL  +L D  D  K + LA  L  +F++YQ +R DWL  W +G    +          
Sbjct: 126  FEPLRRFLTDDSDLRKRYQLAERLADLFDQYQVYRADWLKDWATGEHVINTARGERKVLP 185

Query: 165  -----QARLWRSIA------GGRQYRARRIGQYLDRYARPDGPLPQGLPKRLFAFAILNV 213
                 QA LWR++       G  Q RA    ++++R    +   P GLP R+  F I ++
Sbjct: 186  PGNRWQAELWRALLEDVGEQGMAQSRAGVHQRFIERINSLE-QAPAGLPPRVIVFGISSL 244

Query: 214  SPDVLRVLATQARVGTLHFYLPTPTQGYWGDL---------QTLWQRRREGGAVALFAEQ 264
                L  LA  +R   +   +  P + +W D+         Q   Q+R++G  + L  + 
Sbjct: 245  PAQALEALAGLSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQLDDQT 304

Query: 265  VQEN--PLLQAWGAAGRDFMALVGDYEVVHPLAEIAAYADPLDAGRRTLAEGGLGDSLLR 322
            + ++  PLL AWG  GRD++ L+  Y+      +  +Y      GR  L   G   +LL 
Sbjct: 305  LHQHAHPLLAAWGKQGRDYINLLDSYD------DPGSYQGVFSDGRIDLFSDGSPTTLLN 358

Query: 323  RMQSDLFH-RHAPAVPPVLPAVNL-HDPSLQVHACHTRLRELQVLHDQLRALLDDARFDP 380
             +Q D+   R         PAV+   D S++ H  H+  RE+++LHDQL A       DP
Sbjct: 359  ELQDDILELRPLAESRERWPAVDTTKDRSIRFHIAHSPQREVEILHDQLLARFSA---DP 415

Query: 381  PLQPREIAVLSPDIDPYVPYLDAVFGGHGSDDG--LPYALADASPLASEPLADVFLTLLG 438
             L+PR++ V+ PDID Y P++ AVFG    +D   +P+ L D      EPL      LL 
Sbjct: 416  TLRPRDVIVMLPDIDTYAPHIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLK 475

Query: 439  LPISRFGLHEILDLLASAPIAEAAGLDEAGLERLRGWLHGAGARWGLDAVHRRQHQAP-G 497
            LP SRF + E+LDLL    +    G+ E  L  L  W+ GAG RWGLDA  R     P G
Sbjct: 476  LPDSRFAVSEVLDLLDVPAVRARFGIRENDLPTLHRWIEGAGIRWGLDAAQRASLGLPAG 535

Query: 498  DDAYTWRFALDRLLLGHASGAEDDIDGVAPWPQLEGSALAALDTLLRLLRVLDRHQAALA 557
             +  +WRF L R+LLG+A G  +  DG+ P+ ++ G   A +  L+ LL  L+    AL+
Sbjct: 536  LEQNSWRFGLRRMLLGYAVGVGEACDGIEPYDEIGGLDAALIGPLVALLDALEVACQALS 595

Query: 558  EAMTPVQWRECLLGLLEALIPAAPSAPRAQRALERLRTLIDQFARDAVRAEYAGNVPAEV 617
            E  T  QW E L  LL     A       +  L +L+ L D +            +P  V
Sbjct: 596  EPATVSQWGERLHALLHVFFLAEDEGD--EFLLMQLQDLRDSWLEVCETVGLHDPLPLTV 653

Query: 618  VRAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRAICLLGMNDGDFPRRDPAAGLNR 677
            VR  + + L +       L G ++F  ++PMR +PFR +CLLGMNDGD+PR  P    + 
Sbjct: 654  VREAWLSGLDQGKLSQRFLAGSVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQPPLDFDL 713

Query: 678  LTAELGTERRRHGDRSTREDDRFLFLQLFASAQEVFYLSYLGADARDGTVREPSVLVSEL 737
            + ++      R GDRS REDDR+L L+   SA++  Y+S++G   RD + R  SVL+ +L
Sbjct: 714  MASDY-----RPGDRSRREDDRYLLLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQL 768

Query: 738  LGS-AAQYH-AD----------PKAIDALVVRHPLQPFAAAAFGAVGEDGADPRRFSYRR 785
                AA +H AD           + + AL   HPLQPF+   F    + G+    FSY  
Sbjct: 769  RDHIAAGWHLADAQQGQPARPGEQLLHALTQEHPLQPFSPRYF----QKGSP--LFSYAH 822

Query: 786  QWRPAVDSLAGQRQPLAPWVAGALP-ADASVLPASVSIDDLRRLFADPAGQFLRHRLGMR 844
            +W+     L  Q +  A    G  P  DA  L    S+  L      P   F   RL + 
Sbjct: 823  EWQ----VLHQQGETDAQSEPGLPPYQDAEAL----SLHQLNDFLRHPVRHFFSQRLKVY 874

Query: 845  LPDPAGEDSDLEPLLAPTRGLEQYGLQQQVFEAALAGDADGLYERLRARA-------LLP 897
                     D EP +  T  L++YG  + +  AALA + D   + LRA+A       LLP
Sbjct: 875  FEALEAPTPDEEPFVLDT--LQRYGASESLLGAALA-EPDNAEQALRAQARRLQACGLLP 931

Query: 898  SGPLGRRQLDERLRQ----LRPYADVFRQW----RGEAPAQSQRLQVEIDGTNVHGRVPG 949
                G    +E +      L+ +  + ++W     G  P   +  Q  ++G    GRV  
Sbjct: 932  LAGFGELLQNELIEPLPDLLQRHQQLLQRWPQLVEGALPVHFEHGQHRLEGW--LGRV-- 987

Query: 950  WYANGVGRVQVGALSGR-SAIRDGLEW--LLLRAAGERVPFVRFFEHDDSLGPHPID--P 1004
            + A     + +  +    SA R+ L+W  L+             + ++ +L    +    
Sbjct: 988  FQAEDQSLLSITTVPNTISAGRNNLKWHRLIAPWVTHLAACAAGYPYNSALVASDLTLLL 1047

Query: 1005 EPLSQTQARAALGELLQLYRQGLQTPLAFAPYSSWKYHQAARNDELDKAIKDA----HGQ 1060
             PL Q QA   LG+LL   +  +  PL  A  +++ +      D+ DKA+  A     G 
Sbjct: 1048 APLPQAQAAQLLGDLLVARQAAMNAPLPVAAKTAFAW---LAQDDADKALAAAARAYEGD 1104

Query: 1061 WQSSFGWSESHSPELRLVTRGRD 1083
             ++SFG     S  + L  + RD
Sbjct: 1105 ERTSFG---ERSESIALARQFRD 1124